miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19106 5' -63.4 NC_004684.1 + 15520 0.76 0.075452
Target:  5'- cCGGGGCCGGGCgcuggaGGCGCugauccGCGuUGGUGg -3'
miRNA:   3'- uGCCCCGGCUCGa-----CCGCG------CGU-ACCAC- -5'
19106 5' -63.4 NC_004684.1 + 15591 0.66 0.331457
Target:  5'- -aGGGGgCGcGCUcGGUGCGCuaccgGGUGc -3'
miRNA:   3'- ugCCCCgGCuCGA-CCGCGCGua---CCAC- -5'
19106 5' -63.4 NC_004684.1 + 16769 0.72 0.145289
Target:  5'- cGCGGGGauGAGCggggaccaggugcGGCGCGUcguGUGGUGg -3'
miRNA:   3'- -UGCCCCggCUCGa------------CCGCGCG---UACCAC- -5'
19106 5' -63.4 NC_004684.1 + 18565 0.66 0.331457
Target:  5'- gACGGcGGCCGAGgUcaagacCGCGC-UGGUGg -3'
miRNA:   3'- -UGCC-CCGGCUCgAcc----GCGCGuACCAC- -5'
19106 5' -63.4 NC_004684.1 + 19104 0.66 0.371001
Target:  5'- cGCGaaGGCCG-GUgggacGUGCGCAUGGUGg -3'
miRNA:   3'- -UGCc-CCGGCuCGac---CGCGCGUACCAC- -5'
19106 5' -63.4 NC_004684.1 + 23191 0.66 0.342209
Target:  5'- cCuGGGUCGAcaaguaccgcgagguGCUGGCGCGCGccgGGUu -3'
miRNA:   3'- uGcCCCGGCU---------------CGACCGCGCGUa--CCAc -5'
19106 5' -63.4 NC_004684.1 + 23440 0.69 0.2131
Target:  5'- cACGGuGGCCGAucuGCUGGCcuccaugcccgacaGCGUgacggcgGUGGUGa -3'
miRNA:   3'- -UGCC-CCGGCU---CGACCG--------------CGCG-------UACCAC- -5'
19106 5' -63.4 NC_004684.1 + 26679 0.71 0.166221
Target:  5'- uCGGGGCCaucgucaaccuGCUGGUGCGCGUGcUGc -3'
miRNA:   3'- uGCCCCGGcu---------CGACCGCGCGUACcAC- -5'
19106 5' -63.4 NC_004684.1 + 26745 0.67 0.313606
Target:  5'- gGCGGGGCCaGGCccccaaguucgucGGcCGCGCGgcGGUGa -3'
miRNA:   3'- -UGCCCCGGcUCGa------------CC-GCGCGUa-CCAC- -5'
19106 5' -63.4 NC_004684.1 + 27603 0.7 0.180412
Target:  5'- aACGGGGUgGAGCUuGCcaacagcucaCGCGUGGUGg -3'
miRNA:   3'- -UGCCCCGgCUCGAcCGc---------GCGUACCAC- -5'
19106 5' -63.4 NC_004684.1 + 28073 0.66 0.36284
Target:  5'- gGCGGuguGGCCGGGCcGcCGCGCgacccgcaccggGUGGUGc -3'
miRNA:   3'- -UGCC---CCGGCUCGaCcGCGCG------------UACCAC- -5'
19106 5' -63.4 NC_004684.1 + 35168 0.69 0.226195
Target:  5'- uCGGuGGCCGAGCcggaaccgGGUGUGCAguggaacugGGUGc -3'
miRNA:   3'- uGCC-CCGGCUCGa-------CCGCGCGUa--------CCAC- -5'
19106 5' -63.4 NC_004684.1 + 38131 0.66 0.34611
Target:  5'- gUGGaGGCCGAcuucgacGCauucGCGCGCAUGGUc -3'
miRNA:   3'- uGCC-CCGGCU-------CGac--CGCGCGUACCAc -5'
19106 5' -63.4 NC_004684.1 + 39048 0.66 0.331457
Target:  5'- gACGGuGGCCu-GCUGGuUGCGCuUGGa- -3'
miRNA:   3'- -UGCC-CCGGcuCGACC-GCGCGuACCac -5'
19106 5' -63.4 NC_004684.1 + 40001 0.66 0.36284
Target:  5'- uGCGucGGGuuGAGCacgcgcuccGGCGCG-AUGGUGg -3'
miRNA:   3'- -UGC--CCCggCUCGa--------CCGCGCgUACCAC- -5'
19106 5' -63.4 NC_004684.1 + 46288 0.71 0.162414
Target:  5'- cGCGGcGGCCGAGCgcguugcggcgcuUGGCGUGCGccagcgucUGGa- -3'
miRNA:   3'- -UGCC-CCGGCUCG-------------ACCGCGCGU--------ACCac -5'
19106 5' -63.4 NC_004684.1 + 47934 0.66 0.331457
Target:  5'- cGCGcGGGCCaccgccgcccGGGCaUGG-GCGCAcGGUGg -3'
miRNA:   3'- -UGC-CCCGG----------CUCG-ACCgCGCGUaCCAC- -5'
19106 5' -63.4 NC_004684.1 + 48965 0.68 0.274818
Target:  5'- gGCGGGgugGCCgGGGCgGGCGCGUc-GGUGc -3'
miRNA:   3'- -UGCCC---CGG-CUCGaCCGCGCGuaCCAC- -5'
19106 5' -63.4 NC_004684.1 + 49064 0.66 0.346894
Target:  5'- cCGGGGgCG-GCaccGGCGUGCGgaacagGGUGa -3'
miRNA:   3'- uGCCCCgGCuCGa--CCGCGCGUa-----CCAC- -5'
19106 5' -63.4 NC_004684.1 + 52241 0.71 0.167077
Target:  5'- gGCGGcGGCC-AGCUGcGCGCugGCGUGGa- -3'
miRNA:   3'- -UGCC-CCGGcUCGAC-CGCG--CGUACCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.