miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19106 5' -63.4 NC_004684.1 + 1685 0.75 0.08637
Target:  5'- cACcaGGCCGAGCUGGCGCGCAUcGa- -3'
miRNA:   3'- -UGccCCGGCUCGACCGCGCGUAcCac -5'
19106 5' -63.4 NC_004684.1 + 1757 0.7 0.194682
Target:  5'- uCGGGaCCgGAGCU-GCGCGCGUGGcUGg -3'
miRNA:   3'- uGCCCcGG-CUCGAcCGCGCGUACC-AC- -5'
19106 5' -63.4 NC_004684.1 + 1924 0.66 0.354804
Target:  5'- cCGGccuGCCGGGcCUGGUaccgGCGCAcGGUGg -3'
miRNA:   3'- uGCCc--CGGCUC-GACCG----CGCGUaCCAC- -5'
19106 5' -63.4 NC_004684.1 + 2053 0.66 0.330698
Target:  5'- -gGGGGCCGccaucguGGCcugccUGGCGCuggcCGUGGUGc -3'
miRNA:   3'- ugCCCCGGC-------UCG-----ACCGCGc---GUACCAC- -5'
19106 5' -63.4 NC_004684.1 + 4066 0.67 0.319474
Target:  5'- cCGGGuGaCCGGGUggUGGgacugucgaagcucuCGCGCGUGGUGc -3'
miRNA:   3'- uGCCC-C-GGCUCG--ACC---------------GCGCGUACCAC- -5'
19106 5' -63.4 NC_004684.1 + 4199 0.67 0.313606
Target:  5'- gAUGGGGCCGuucggccGCgucgagucgacccGGCGCGCAaccUGGUu -3'
miRNA:   3'- -UGCCCCGGCu------CGa------------CCGCGCGU---ACCAc -5'
19106 5' -63.4 NC_004684.1 + 4382 0.66 0.331457
Target:  5'- cCGGaGGCCGAGCUGGUcuaucGCGCc----- -3'
miRNA:   3'- uGCC-CCGGCUCGACCG-----CGCGuaccac -5'
19106 5' -63.4 NC_004684.1 + 4433 0.69 0.231849
Target:  5'- cGCGcGGGCCu-GCUGGCGCaGC-UGGa- -3'
miRNA:   3'- -UGC-CCCGGcuCGACCGCG-CGuACCac -5'
19106 5' -63.4 NC_004684.1 + 5602 1.06 0.000321
Target:  5'- gACGGGGCCGAGCUGGCGCGCAUGGUGc -3'
miRNA:   3'- -UGCCCCGGCUCGACCGCGCGUACCAC- -5'
19106 5' -63.4 NC_004684.1 + 5765 0.67 0.309259
Target:  5'- -gGGGGuUCGA-CUGGCccaaGUGCGUGGUGu -3'
miRNA:   3'- ugCCCC-GGCUcGACCG----CGCGUACCAC- -5'
19106 5' -63.4 NC_004684.1 + 6510 0.7 0.204736
Target:  5'- cUGGaGGCCGAGgaGGUGCGCAUc--- -3'
miRNA:   3'- uGCC-CCGGCUCgaCCGCGCGUAccac -5'
19106 5' -63.4 NC_004684.1 + 7568 0.66 0.339112
Target:  5'- cCGGGuggcGCUGgugcGGCUGGUGCGCGgcaacccGGUGg -3'
miRNA:   3'- uGCCC----CGGC----UCGACCGCGCGUa------CCAC- -5'
19106 5' -63.4 NC_004684.1 + 7605 0.67 0.286171
Target:  5'- gGCGGuguucgccuccuGGCCGGucgagagccagcucGCcgUGGCGgGCGUGGUGa -3'
miRNA:   3'- -UGCC------------CCGGCU--------------CG--ACCGCgCGUACCAC- -5'
19106 5' -63.4 NC_004684.1 + 7729 0.68 0.255666
Target:  5'- -aGGGucaauGCgCGA-CUGGCGCGCAUGGg- -3'
miRNA:   3'- ugCCC-----CG-GCUcGACCGCGCGUACCac -5'
19106 5' -63.4 NC_004684.1 + 7781 0.67 0.323184
Target:  5'- cCGuGGUCGAGCauUGGUGCGCgggaugugaccggGUGGUGc -3'
miRNA:   3'- uGCcCCGGCUCG--ACCGCGCG-------------UACCAC- -5'
19106 5' -63.4 NC_004684.1 + 7909 0.76 0.071466
Target:  5'- uUGGGGCC--GCUGGcCGCGCAggUGGUGg -3'
miRNA:   3'- uGCCCCGGcuCGACC-GCGCGU--ACCAC- -5'
19106 5' -63.4 NC_004684.1 + 9464 0.66 0.331457
Target:  5'- cCGGGcGCUgGAGCUGGCGgGCAa---- -3'
miRNA:   3'- uGCCC-CGG-CUCGACCGCgCGUaccac -5'
19106 5' -63.4 NC_004684.1 + 10111 0.69 0.226195
Target:  5'- uGCGGcucgccgucacaGGCCGAGCUGuGCGgGCcgacGGUGc -3'
miRNA:   3'- -UGCC------------CCGGCUCGAC-CGCgCGua--CCAC- -5'
19106 5' -63.4 NC_004684.1 + 11846 0.66 0.346894
Target:  5'- cACGGcGGCC-AGC-GGCGCGaguuCGUGGUu -3'
miRNA:   3'- -UGCC-CCGGcUCGaCCGCGC----GUACCAc -5'
19106 5' -63.4 NC_004684.1 + 13277 0.66 0.371001
Target:  5'- cUGGuGGCCGccgguGGCUGGUGCGCGccGUc -3'
miRNA:   3'- uGCC-CCGGC-----UCGACCGCGCGUacCAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.