miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19106 5' -63.4 NC_004684.1 + 9464 0.66 0.331457
Target:  5'- cCGGGcGCUgGAGCUGGCGgGCAa---- -3'
miRNA:   3'- uGCCC-CGG-CUCGACCGCgCGUaccac -5'
19106 5' -63.4 NC_004684.1 + 55335 0.68 0.274818
Target:  5'- gACGGcuGGCagguGAGcCUGGCGCGCAUGc-- -3'
miRNA:   3'- -UGCC--CCGg---CUC-GACCGCGCGUACcac -5'
19106 5' -63.4 NC_004684.1 + 57006 0.68 0.274818
Target:  5'- cCGGGGaCGAGCgcgccaucggGGUGCGC-UGGUc -3'
miRNA:   3'- uGCCCCgGCUCGa---------CCGCGCGuACCAc -5'
19106 5' -63.4 NC_004684.1 + 64755 0.67 0.281452
Target:  5'- ---uGGCCGAGCUGGUGCcagGCGUcGGUc -3'
miRNA:   3'- ugccCCGGCUCGACCGCG---CGUA-CCAc -5'
19106 5' -63.4 NC_004684.1 + 66350 0.67 0.281452
Target:  5'- cCGGGG-CGGGCggccagGGCGaCGCG-GGUGu -3'
miRNA:   3'- uGCCCCgGCUCGa-----CCGC-GCGUaCCAC- -5'
19106 5' -63.4 NC_004684.1 + 4066 0.67 0.319474
Target:  5'- cCGGGuGaCCGGGUggUGGgacugucgaagcucuCGCGCGUGGUGc -3'
miRNA:   3'- uGCCC-C-GGCUCG--ACC---------------GCGCGUACCAC- -5'
19106 5' -63.4 NC_004684.1 + 55026 0.66 0.32843
Target:  5'- -gGGGaGCCGaAGgUGGUGCGCAgugugcccagcgcGGUGa -3'
miRNA:   3'- ugCCC-CGGC-UCgACCGCGCGUa------------CCAC- -5'
19106 5' -63.4 NC_004684.1 + 15591 0.66 0.331457
Target:  5'- -aGGGGgCGcGCUcGGUGCGCuaccgGGUGc -3'
miRNA:   3'- ugCCCCgGCuCGA-CCGCGCGua---CCAC- -5'
19106 5' -63.4 NC_004684.1 + 4382 0.66 0.331457
Target:  5'- cCGGaGGCCGAGCUGGUcuaucGCGCc----- -3'
miRNA:   3'- uGCC-CCGGCUCGACCG-----CGCGuaccac -5'
19106 5' -63.4 NC_004684.1 + 48965 0.68 0.274818
Target:  5'- gGCGGGgugGCCgGGGCgGGCGCGUc-GGUGc -3'
miRNA:   3'- -UGCCC---CGG-CUCGaCCGCGCGuaCCAC- -5'
19106 5' -63.4 NC_004684.1 + 58959 0.69 0.237623
Target:  5'- cCGGGcccuguccGCCGAGCUGcCGCGC-UGGUu -3'
miRNA:   3'- uGCCC--------CGGCUCGACcGCGCGuACCAc -5'
19106 5' -63.4 NC_004684.1 + 4433 0.69 0.231849
Target:  5'- cGCGcGGGCCu-GCUGGCGCaGC-UGGa- -3'
miRNA:   3'- -UGC-CCCGGcuCGACCGCG-CGuACCac -5'
19106 5' -63.4 NC_004684.1 + 58321 0.72 0.132236
Target:  5'- gGCGacGCCGGGUcaUGGCGCGCccGGUGg -3'
miRNA:   3'- -UGCccCGGCUCG--ACCGCGCGuaCCAC- -5'
19106 5' -63.4 NC_004684.1 + 16769 0.72 0.145289
Target:  5'- cGCGGGGauGAGCggggaccaggugcGGCGCGUcguGUGGUGg -3'
miRNA:   3'- -UGCCCCggCUCGa------------CCGCGCG---UACCAC- -5'
19106 5' -63.4 NC_004684.1 + 62033 0.72 0.14681
Target:  5'- cACGGGGuuGAGCggGGUGgGCAUGu-- -3'
miRNA:   3'- -UGCCCCggCUCGa-CCGCgCGUACcac -5'
19106 5' -63.4 NC_004684.1 + 46288 0.71 0.162414
Target:  5'- cGCGGcGGCCGAGCgcguugcggcgcuUGGCGUGCGccagcgucUGGa- -3'
miRNA:   3'- -UGCC-CCGGCUCG-------------ACCGCGCGU--------ACCac -5'
19106 5' -63.4 NC_004684.1 + 26679 0.71 0.166221
Target:  5'- uCGGGGCCaucgucaaccuGCUGGUGCGCGUGcUGc -3'
miRNA:   3'- uGCCCCGGcu---------CGACCGCGCGUACcAC- -5'
19106 5' -63.4 NC_004684.1 + 27603 0.7 0.180412
Target:  5'- aACGGGGUgGAGCUuGCcaacagcucaCGCGUGGUGg -3'
miRNA:   3'- -UGCCCCGgCUCGAcCGc---------GCGUACCAC- -5'
19106 5' -63.4 NC_004684.1 + 23440 0.69 0.2131
Target:  5'- cACGGuGGCCGAucuGCUGGCcuccaugcccgacaGCGUgacggcgGUGGUGa -3'
miRNA:   3'- -UGCC-CCGGCU---CGACCG--------------CGCG-------UACCAC- -5'
19106 5' -63.4 NC_004684.1 + 35168 0.69 0.226195
Target:  5'- uCGGuGGCCGAGCcggaaccgGGUGUGCAguggaacugGGUGc -3'
miRNA:   3'- uGCC-CCGGCUCGa-------CCGCGCGUa--------CCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.