miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19106 5' -63.4 NC_004684.1 + 5602 1.06 0.000321
Target:  5'- gACGGGGCCGAGCUGGCGCGCAUGGUGc -3'
miRNA:   3'- -UGCCCCGGCUCGACCGCGCGUACCAC- -5'
19106 5' -63.4 NC_004684.1 + 7909 0.76 0.071466
Target:  5'- uUGGGGCC--GCUGGcCGCGCAggUGGUGg -3'
miRNA:   3'- uGCCCCGGcuCGACC-GCGCGU--ACCAC- -5'
19106 5' -63.4 NC_004684.1 + 15520 0.76 0.075452
Target:  5'- cCGGGGCCGGGCgcuggaGGCGCugauccGCGuUGGUGg -3'
miRNA:   3'- uGCCCCGGCUCGa-----CCGCG------CGU-ACCAC- -5'
19106 5' -63.4 NC_004684.1 + 1685 0.75 0.08637
Target:  5'- cACcaGGCCGAGCUGGCGCGCAUcGa- -3'
miRNA:   3'- -UGccCCGGCUCGACCGCGCGUAcCac -5'
19106 5' -63.4 NC_004684.1 + 67009 0.73 0.109906
Target:  5'- cGCGGGGCCGucggucucGGCcaGGuCGCGCAUGGc- -3'
miRNA:   3'- -UGCCCCGGC--------UCGa-CC-GCGCGUACCac -5'
19106 5' -63.4 NC_004684.1 + 66714 0.73 0.118693
Target:  5'- uCGGGGCCGAggaucaggcgcacGCUGucGUGCGCGUcGGUGu -3'
miRNA:   3'- uGCCCCGGCU-------------CGAC--CGCGCGUA-CCAC- -5'
19106 5' -63.4 NC_004684.1 + 58321 0.72 0.132236
Target:  5'- gGCGacGCCGGGUcaUGGCGCGCccGGUGg -3'
miRNA:   3'- -UGCccCGGCUCG--ACCGCGCGuaCCAC- -5'
19106 5' -63.4 NC_004684.1 + 16769 0.72 0.145289
Target:  5'- cGCGGGGauGAGCggggaccaggugcGGCGCGUcguGUGGUGg -3'
miRNA:   3'- -UGCCCCggCUCGa------------CCGCGCG---UACCAC- -5'
19106 5' -63.4 NC_004684.1 + 57058 0.72 0.145668
Target:  5'- gGCGGGGUCGAuggcggccugcguuGC-GGCGCGCAcaucGGUGc -3'
miRNA:   3'- -UGCCCCGGCU--------------CGaCCGCGCGUa---CCAC- -5'
19106 5' -63.4 NC_004684.1 + 62033 0.72 0.14681
Target:  5'- cACGGGGuuGAGCggGGUGgGCAUGu-- -3'
miRNA:   3'- -UGCCCCggCUCGa-CCGCgCGUACcac -5'
19106 5' -63.4 NC_004684.1 + 46288 0.71 0.162414
Target:  5'- cGCGGcGGCCGAGCgcguugcggcgcuUGGCGUGCGccagcgucUGGa- -3'
miRNA:   3'- -UGCC-CCGGCUCG-------------ACCGCGCGU--------ACCac -5'
19106 5' -63.4 NC_004684.1 + 26679 0.71 0.166221
Target:  5'- uCGGGGCCaucgucaaccuGCUGGUGCGCGUGcUGc -3'
miRNA:   3'- uGCCCCGGcu---------CGACCGCGCGUACcAC- -5'
19106 5' -63.4 NC_004684.1 + 52241 0.71 0.167077
Target:  5'- gGCGGcGGCC-AGCUGcGCGCugGCGUGGa- -3'
miRNA:   3'- -UGCC-CCGGcUCGAC-CGCG--CGUACCac -5'
19106 5' -63.4 NC_004684.1 + 27603 0.7 0.180412
Target:  5'- aACGGGGUgGAGCUuGCcaacagcucaCGCGUGGUGg -3'
miRNA:   3'- -UGCCCCGgCUCGAcCGc---------GCGUACCAC- -5'
19106 5' -63.4 NC_004684.1 + 1757 0.7 0.194682
Target:  5'- uCGGGaCCgGAGCU-GCGCGCGUGGcUGg -3'
miRNA:   3'- uGCCCcGG-CUCGAcCGCGCGUACC-AC- -5'
19106 5' -63.4 NC_004684.1 + 6510 0.7 0.204736
Target:  5'- cUGGaGGCCGAGgaGGUGCGCAUc--- -3'
miRNA:   3'- uGCC-CCGGCUCgaCCGCGCGUAccac -5'
19106 5' -63.4 NC_004684.1 + 23440 0.69 0.2131
Target:  5'- cACGGuGGCCGAucuGCUGGCcuccaugcccgacaGCGUgacggcgGUGGUGa -3'
miRNA:   3'- -UGCC-CCGGCU---CGACCG--------------CGCG-------UACCAC- -5'
19106 5' -63.4 NC_004684.1 + 10111 0.69 0.226195
Target:  5'- uGCGGcucgccgucacaGGCCGAGCUGuGCGgGCcgacGGUGc -3'
miRNA:   3'- -UGCC------------CCGGCUCGAC-CGCgCGua--CCAC- -5'
19106 5' -63.4 NC_004684.1 + 35168 0.69 0.226195
Target:  5'- uCGGuGGCCGAGCcggaaccgGGUGUGCAguggaacugGGUGc -3'
miRNA:   3'- uGCC-CCGGCUCGa-------CCGCGCGUa--------CCAC- -5'
19106 5' -63.4 NC_004684.1 + 4433 0.69 0.231849
Target:  5'- cGCGcGGGCCu-GCUGGCGCaGC-UGGa- -3'
miRNA:   3'- -UGC-CCCGGcuCGACCGCG-CGuACCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.