miRNA display CGI


Results 21 - 40 of 54 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19106 5' -63.4 NC_004684.1 + 26679 0.71 0.166221
Target:  5'- uCGGGGCCaucgucaaccuGCUGGUGCGCGUGcUGc -3'
miRNA:   3'- uGCCCCGGcu---------CGACCGCGCGUACcAC- -5'
19106 5' -63.4 NC_004684.1 + 27603 0.7 0.180412
Target:  5'- aACGGGGUgGAGCUuGCcaacagcucaCGCGUGGUGg -3'
miRNA:   3'- -UGCCCCGgCUCGAcCGc---------GCGUACCAC- -5'
19106 5' -63.4 NC_004684.1 + 23440 0.69 0.2131
Target:  5'- cACGGuGGCCGAucuGCUGGCcuccaugcccgacaGCGUgacggcgGUGGUGa -3'
miRNA:   3'- -UGCC-CCGGCU---CGACCG--------------CGCG-------UACCAC- -5'
19106 5' -63.4 NC_004684.1 + 35168 0.69 0.226195
Target:  5'- uCGGuGGCCGAGCcggaaccgGGUGUGCAguggaacugGGUGc -3'
miRNA:   3'- uGCC-CCGGCUCGa-------CCGCGCGUa--------CCAC- -5'
19106 5' -63.4 NC_004684.1 + 4433 0.69 0.231849
Target:  5'- cGCGcGGGCCu-GCUGGCGCaGC-UGGa- -3'
miRNA:   3'- -UGC-CCCGGcuCGACCGCG-CGuACCac -5'
19106 5' -63.4 NC_004684.1 + 58959 0.69 0.237623
Target:  5'- cCGGGcccuguccGCCGAGCUGcCGCGC-UGGUu -3'
miRNA:   3'- uGCCC--------CGGCUCGACcGCGCGuACCAc -5'
19106 5' -63.4 NC_004684.1 + 48965 0.68 0.274818
Target:  5'- gGCGGGgugGCCgGGGCgGGCGCGUc-GGUGc -3'
miRNA:   3'- -UGCCC---CGG-CUCGaCCGCGCGuaCCAC- -5'
19106 5' -63.4 NC_004684.1 + 6510 0.7 0.204736
Target:  5'- cUGGaGGCCGAGgaGGUGCGCAUc--- -3'
miRNA:   3'- uGCC-CCGGCUCgaCCGCGCGUAccac -5'
19106 5' -63.4 NC_004684.1 + 10111 0.69 0.226195
Target:  5'- uGCGGcucgccgucacaGGCCGAGCUGuGCGgGCcgacGGUGc -3'
miRNA:   3'- -UGCC------------CCGGCUCGAC-CGCgCGua--CCAC- -5'
19106 5' -63.4 NC_004684.1 + 7729 0.68 0.255666
Target:  5'- -aGGGucaauGCgCGA-CUGGCGCGCAUGGg- -3'
miRNA:   3'- ugCCC-----CG-GCUcGACCGCGCGUACCac -5'
19106 5' -63.4 NC_004684.1 + 7605 0.67 0.286171
Target:  5'- gGCGGuguucgccuccuGGCCGGucgagagccagcucGCcgUGGCGgGCGUGGUGa -3'
miRNA:   3'- -UGCC------------CCGGCU--------------CG--ACCGCgCGUACCAC- -5'
19106 5' -63.4 NC_004684.1 + 5765 0.67 0.309259
Target:  5'- -gGGGGuUCGA-CUGGCccaaGUGCGUGGUGu -3'
miRNA:   3'- ugCCCC-GGCUcGACCG----CGCGUACCAC- -5'
19106 5' -63.4 NC_004684.1 + 1757 0.7 0.194682
Target:  5'- uCGGGaCCgGAGCU-GCGCGCGUGGcUGg -3'
miRNA:   3'- uGCCCcGG-CUCGAcCGCGCGUACC-AC- -5'
19106 5' -63.4 NC_004684.1 + 52241 0.71 0.167077
Target:  5'- gGCGGcGGCC-AGCUGcGCGCugGCGUGGa- -3'
miRNA:   3'- -UGCC-CCGGcUCGAC-CGCG--CGUACCac -5'
19106 5' -63.4 NC_004684.1 + 57058 0.72 0.145668
Target:  5'- gGCGGGGUCGAuggcggccugcguuGC-GGCGCGCAcaucGGUGc -3'
miRNA:   3'- -UGCCCCGGCU--------------CGaCCGCGCGUa---CCAC- -5'
19106 5' -63.4 NC_004684.1 + 66714 0.73 0.118693
Target:  5'- uCGGGGCCGAggaucaggcgcacGCUGucGUGCGCGUcGGUGu -3'
miRNA:   3'- uGCCCCGGCU-------------CGAC--CGCGCGUA-CCAC- -5'
19106 5' -63.4 NC_004684.1 + 67009 0.73 0.109906
Target:  5'- cGCGGGGCCGucggucucGGCcaGGuCGCGCAUGGc- -3'
miRNA:   3'- -UGCCCCGGC--------UCGa-CC-GCGCGUACCac -5'
19106 5' -63.4 NC_004684.1 + 1685 0.75 0.08637
Target:  5'- cACcaGGCCGAGCUGGCGCGCAUcGa- -3'
miRNA:   3'- -UGccCCGGCUCGACCGCGCGUAcCac -5'
19106 5' -63.4 NC_004684.1 + 7909 0.76 0.071466
Target:  5'- uUGGGGCC--GCUGGcCGCGCAggUGGUGg -3'
miRNA:   3'- uGCCCCGGcuCGACC-GCGCGU--ACCAC- -5'
19106 5' -63.4 NC_004684.1 + 19104 0.66 0.371001
Target:  5'- cGCGaaGGCCG-GUgggacGUGCGCAUGGUGg -3'
miRNA:   3'- -UGCc-CCGGCuCGac---CGCGCGUACCAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.