miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19114 3' -58.1 NC_004684.1 + 16355 0.66 0.624355
Target:  5'- cGCUGGcCGACaaGCUGGcgGCCGaGUACa -3'
miRNA:   3'- uUGACCaGCUGcaUGGCC--CGGC-CAUG- -5'
19114 3' -58.1 NC_004684.1 + 46755 0.66 0.623287
Target:  5'- -uCUGGggucagcUCGACGcGCUGGcgcucGCCGGUGCc -3'
miRNA:   3'- uuGACC-------AGCUGCaUGGCC-----CGGCCAUG- -5'
19114 3' -58.1 NC_004684.1 + 43430 0.66 0.613683
Target:  5'- ---aGGccCGGCGagGCCGaGGUCGGUGCg -3'
miRNA:   3'- uugaCCa-GCUGCa-UGGC-CCGGCCAUG- -5'
19114 3' -58.1 NC_004684.1 + 64460 0.66 0.613683
Target:  5'- gGACUGGUCgcaGAUGUugUagagcaGGCCGGUGg -3'
miRNA:   3'- -UUGACCAG---CUGCAugGc-----CCGGCCAUg -5'
19114 3' -58.1 NC_004684.1 + 65438 0.66 0.613683
Target:  5'- cGCUGGcgugCGGCGcgcggccACCGuGcGCCGGUACc -3'
miRNA:   3'- uUGACCa---GCUGCa------UGGC-C-CGGCCAUG- -5'
19114 3' -58.1 NC_004684.1 + 1130 0.66 0.613683
Target:  5'- --aUGGUCGACGgccacggcaUGCCGGGC--GUGCc -3'
miRNA:   3'- uugACCAGCUGC---------AUGGCCCGgcCAUG- -5'
19114 3' -58.1 NC_004684.1 + 51010 0.66 0.613683
Target:  5'- gAugUaGUCGAUGUGCCGGGU--GUACu -3'
miRNA:   3'- -UugAcCAGCUGCAUGGCCCGgcCAUG- -5'
19114 3' -58.1 NC_004684.1 + 27137 0.66 0.603025
Target:  5'- cGCUGaUCGACGUGCUGGGCg----- -3'
miRNA:   3'- uUGACcAGCUGCAUGGCCCGgccaug -5'
19114 3' -58.1 NC_004684.1 + 28061 0.66 0.603025
Target:  5'- --gUGGUCGgccccgGCGgugugGCCGGGCCGccGCg -3'
miRNA:   3'- uugACCAGC------UGCa----UGGCCCGGCcaUG- -5'
19114 3' -58.1 NC_004684.1 + 35644 0.66 0.603025
Target:  5'- uACaGGcCGACGUACaGGGCCGucgGCg -3'
miRNA:   3'- uUGaCCaGCUGCAUGgCCCGGCca-UG- -5'
19114 3' -58.1 NC_004684.1 + 55789 0.66 0.603025
Target:  5'- --aUGG-CGGCGUgACCGGGugguCCGGUGa -3'
miRNA:   3'- uugACCaGCUGCA-UGGCCC----GGCCAUg -5'
19114 3' -58.1 NC_004684.1 + 29532 0.66 0.601961
Target:  5'- cGCUGGUCGGugguugccggUGUACCgauucugGGGCCGcUGCc -3'
miRNA:   3'- uUGACCAGCU----------GCAUGG-------CCCGGCcAUG- -5'
19114 3' -58.1 NC_004684.1 + 47114 0.66 0.596642
Target:  5'- cGCUGGUgucgaccacaggggcCGggaACGcGCCGGGCCGGa-- -3'
miRNA:   3'- uUGACCA---------------GC---UGCaUGGCCCGGCCaug -5'
19114 3' -58.1 NC_004684.1 + 51168 0.66 0.592392
Target:  5'- gGugUGGcCGAUGcGCCGGGCCauGG-ACc -3'
miRNA:   3'- -UugACCaGCUGCaUGGCCCGG--CCaUG- -5'
19114 3' -58.1 NC_004684.1 + 158 0.66 0.58179
Target:  5'- cGCcGGUCGAacCGgugACCGGGuuGGUc- -3'
miRNA:   3'- uUGaCCAGCU--GCa--UGGCCCggCCAug -5'
19114 3' -58.1 NC_004684.1 + 6833 0.67 0.575447
Target:  5'- cAGCUGGucgaguucgagggugUCGACGgcACCGGGCgCGGc-- -3'
miRNA:   3'- -UUGACC---------------AGCUGCa-UGGCCCG-GCCaug -5'
19114 3' -58.1 NC_004684.1 + 9523 0.67 0.575447
Target:  5'- cACcGGUCcuGGCGUGCCgggacgcuggcaaucGGGCgGGUACc -3'
miRNA:   3'- uUGaCCAG--CUGCAUGG---------------CCCGgCCAUG- -5'
19114 3' -58.1 NC_004684.1 + 15892 0.67 0.560711
Target:  5'- ---aGG-CGGCGgugACCGGGC-GGUGCc -3'
miRNA:   3'- uugaCCaGCUGCa--UGGCCCGgCCAUG- -5'
19114 3' -58.1 NC_004684.1 + 7646 0.67 0.539848
Target:  5'- uGGCgGG-CGugGUgACCGGGUCGGcgGCc -3'
miRNA:   3'- -UUGaCCaGCugCA-UGGCCCGGCCa-UG- -5'
19114 3' -58.1 NC_004684.1 + 64572 0.68 0.498977
Target:  5'- cGCaGGaUCG-UGUACCGGcCCGGUACg -3'
miRNA:   3'- uUGaCC-AGCuGCAUGGCCcGGCCAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.