miRNA display CGI


Results 41 - 60 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19121 3' -59.1 NC_004684.1 + 57672 0.67 0.486098
Target:  5'- gACC-CCACagcAGGUGGCCaucggccaggcauggCUGcGCAACg -3'
miRNA:   3'- -UGGuGGUGgu-UCCACCGG---------------GAC-CGUUG- -5'
19121 3' -59.1 NC_004684.1 + 17135 0.67 0.482108
Target:  5'- gACgACC-CCAAGGUGGUucucaaguaCCUGGaCGAg -3'
miRNA:   3'- -UGgUGGuGGUUCCACCG---------GGACC-GUUg -5'
19121 3' -59.1 NC_004684.1 + 25038 0.67 0.482108
Target:  5'- uGCUGCCuuuCCGguuggcgauguAGGUGGCCagGGCGGCc -3'
miRNA:   3'- -UGGUGGu--GGU-----------UCCACCGGgaCCGUUG- -5'
19121 3' -59.1 NC_004684.1 + 36269 0.67 0.482108
Target:  5'- cGCCAggUCGCCAAGGUccuccaGCgCCUGcGCGGCg -3'
miRNA:   3'- -UGGU--GGUGGUUCCAc-----CG-GGAC-CGUUG- -5'
19121 3' -59.1 NC_004684.1 + 47175 0.67 0.482108
Target:  5'- aGCgGCgGCCAGGGccGCCgCUGcGCGGCg -3'
miRNA:   3'- -UGgUGgUGGUUCCacCGG-GAC-CGUUG- -5'
19121 3' -59.1 NC_004684.1 + 28413 0.67 0.482108
Target:  5'- uGCCGCCgguugACCu-GGUGGUCgaCUGGCAugACa -3'
miRNA:   3'- -UGGUGG-----UGGuuCCACCGG--GACCGU--UG- -5'
19121 3' -59.1 NC_004684.1 + 66629 0.67 0.482108
Target:  5'- uGCCugCgGCCuuGGUGGCCacgaUGGCcucGGCg -3'
miRNA:   3'- -UGGugG-UGGuuCCACCGGg---ACCG---UUG- -5'
19121 3' -59.1 NC_004684.1 + 36832 0.67 0.482108
Target:  5'- uCCACCACCGAGGUcgaGGUgCcGGagGACg -3'
miRNA:   3'- uGGUGGUGGUUCCA---CCGgGaCCg-UUG- -5'
19121 3' -59.1 NC_004684.1 + 6007 0.67 0.482108
Target:  5'- gGCgCACCAUCGGacgcGGUGGCCUUuaGGCcGCc -3'
miRNA:   3'- -UG-GUGGUGGUU----CCACCGGGA--CCGuUG- -5'
19121 3' -59.1 NC_004684.1 + 13190 0.67 0.472204
Target:  5'- aGCCACgACCu-GGUGGCUgaaaucgagCgGGCGACc -3'
miRNA:   3'- -UGGUGgUGGuuCCACCGG---------GaCCGUUG- -5'
19121 3' -59.1 NC_004684.1 + 63221 0.67 0.472204
Target:  5'- gGCCACCggcggcucguuGCCGGGcGUcGGCCC-GaGCAGCu -3'
miRNA:   3'- -UGGUGG-----------UGGUUC-CA-CCGGGaC-CGUUG- -5'
19121 3' -59.1 NC_004684.1 + 6596 0.67 0.472204
Target:  5'- cGCCACgCACCGAGGcGaGuUCCUGGUcGCc -3'
miRNA:   3'- -UGGUG-GUGGUUCCaC-C-GGGACCGuUG- -5'
19121 3' -59.1 NC_004684.1 + 395 0.67 0.472204
Target:  5'- gAUCACCGCCGuGGcgGGCaagCUgGGCGACu -3'
miRNA:   3'- -UGGUGGUGGUuCCa-CCGg--GA-CCGUUG- -5'
19121 3' -59.1 NC_004684.1 + 60749 0.67 0.462403
Target:  5'- cACCGCgCugCAcgucAGGgagcacGGCCCUGGCcaGGCc -3'
miRNA:   3'- -UGGUG-GugGU----UCCa-----CCGGGACCG--UUG- -5'
19121 3' -59.1 NC_004684.1 + 31835 0.67 0.462403
Target:  5'- cAUCGCCACCGGGGcGGgCCUGuaugaGACg -3'
miRNA:   3'- -UGGUGGUGGUUCCaCCgGGACcg---UUG- -5'
19121 3' -59.1 NC_004684.1 + 50283 0.67 0.462403
Target:  5'- gGCCAgCGCCA----GGCCCgacGGCGACu -3'
miRNA:   3'- -UGGUgGUGGUuccaCCGGGa--CCGUUG- -5'
19121 3' -59.1 NC_004684.1 + 15607 0.67 0.462403
Target:  5'- -gCGCUACC-GGGU-GCCCgaaGGCAACg -3'
miRNA:   3'- ugGUGGUGGuUCCAcCGGGa--CCGUUG- -5'
19121 3' -59.1 NC_004684.1 + 5908 0.67 0.459484
Target:  5'- cGCCGCCugCGcggcgacaucgacuAGGUGGCacgcgagcaCC-GGCGGCg -3'
miRNA:   3'- -UGGUGGugGU--------------UCCACCG---------GGaCCGUUG- -5'
19121 3' -59.1 NC_004684.1 + 19440 0.67 0.45271
Target:  5'- aACCACCGugcgcccaugcCCGGgcggcGGUGGCCC-GcGCGACa -3'
miRNA:   3'- -UGGUGGU-----------GGUU-----CCACCGGGaC-CGUUG- -5'
19121 3' -59.1 NC_004684.1 + 65100 0.67 0.45271
Target:  5'- gUCAgCACCGcgucGUGGCCCaggcUGGCGGCa -3'
miRNA:   3'- uGGUgGUGGUuc--CACCGGG----ACCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.