miRNA display CGI


Results 21 - 40 of 189 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19121 3' -59.1 NC_004684.1 + 5908 0.67 0.459484
Target:  5'- cGCCGCCugCGcggcgacaucgacuAGGUGGCacgcgagcaCC-GGCGGCg -3'
miRNA:   3'- -UGGUGGugGU--------------UCCACCG---------GGaCCGUUG- -5'
19121 3' -59.1 NC_004684.1 + 6007 0.67 0.482108
Target:  5'- gGCgCACCAUCGGacgcGGUGGCCUUuaGGCcGCc -3'
miRNA:   3'- -UG-GUGGUGGUU----CCACCGGGA--CCGuUG- -5'
19121 3' -59.1 NC_004684.1 + 6069 0.79 0.077163
Target:  5'- -aCGCCGCCGAGGgcggcGGCCC-GGCGGCg -3'
miRNA:   3'- ugGUGGUGGUUCCa----CCGGGaCCGUUG- -5'
19121 3' -59.1 NC_004684.1 + 6139 0.71 0.278468
Target:  5'- cACCGCCGCCA---UGGCCCugcuguucaaUGGCGAg -3'
miRNA:   3'- -UGGUGGUGGUuccACCGGG----------ACCGUUg -5'
19121 3' -59.1 NC_004684.1 + 6596 0.67 0.472204
Target:  5'- cGCCACgCACCGAGGcGaGuUCCUGGUcGCc -3'
miRNA:   3'- -UGGUG-GUGGUUCCaC-C-GGGACCGuUG- -5'
19121 3' -59.1 NC_004684.1 + 7129 0.72 0.232979
Target:  5'- cGCCACCGCCGagguacacccggaAGGUGGCCaccgccugcGGguGCa -3'
miRNA:   3'- -UGGUGGUGGU-------------UCCACCGGga-------CCguUG- -5'
19121 3' -59.1 NC_004684.1 + 7505 0.7 0.322203
Target:  5'- cGCCGCCGCauCGGGGUGGaCCUgcccGGCAc- -3'
miRNA:   3'- -UGGUGGUG--GUUCCACC-GGGa---CCGUug -5'
19121 3' -59.1 NC_004684.1 + 7560 0.66 0.533023
Target:  5'- gACCGgC-CCcGGGUGGCgCUGGUgcGGCu -3'
miRNA:   3'- -UGGUgGuGGuUCCACCGgGACCG--UUG- -5'
19121 3' -59.1 NC_004684.1 + 7912 0.69 0.337879
Target:  5'- gGCCGCCAgCCAGccGGUGGagaaCCCaGGCAAg -3'
miRNA:   3'- -UGGUGGU-GGUU--CCACC----GGGaCCGUUg -5'
19121 3' -59.1 NC_004684.1 + 7971 0.68 0.424317
Target:  5'- --gGCCGCC-AGGcGGCCgUGcGCAACa -3'
miRNA:   3'- uggUGGUGGuUCCaCCGGgAC-CGUUG- -5'
19121 3' -59.1 NC_004684.1 + 8639 0.69 0.354103
Target:  5'- aGCCACCGCCAGGGcaacgcgaucaUGcguGCCCgGuGCGGCc -3'
miRNA:   3'- -UGGUGGUGGUUCC-----------AC---CGGGaC-CGUUG- -5'
19121 3' -59.1 NC_004684.1 + 9125 0.72 0.239594
Target:  5'- cAUCACCGCCGAGGccaUGGUcaagaugcucggCCUGGcCGACg -3'
miRNA:   3'- -UGGUGGUGGUUCC---ACCG------------GGACC-GUUG- -5'
19121 3' -59.1 NC_004684.1 + 9510 0.69 0.379452
Target:  5'- gGCCACCAgCCAGcaccGGUCCUGGCGu- -3'
miRNA:   3'- -UGGUGGU-GGUUcca-CCGGGACCGUug -5'
19121 3' -59.1 NC_004684.1 + 9875 0.67 0.492112
Target:  5'- gGCCACCGCCucGGgauccGGCgCaGGCAccuGCg -3'
miRNA:   3'- -UGGUGGUGGuuCCa----CCGgGaCCGU---UG- -5'
19121 3' -59.1 NC_004684.1 + 10551 0.67 0.443129
Target:  5'- cAUCGUCGgCGGGGaGGCCCUGGCGu- -3'
miRNA:   3'- -UGGUGGUgGUUCCaCCGGGACCGUug -5'
19121 3' -59.1 NC_004684.1 + 10557 0.66 0.502211
Target:  5'- cACCAgCugCGccAGGUGGUCgUGGuCGAUg -3'
miRNA:   3'- -UGGUgGugGU--UCCACCGGgACC-GUUG- -5'
19121 3' -59.1 NC_004684.1 + 11294 0.7 0.329972
Target:  5'- gAUCGgCACCAcgcuGGUGGCCaccgcugccuUUGGCGACa -3'
miRNA:   3'- -UGGUgGUGGUu---CCACCGG----------GACCGUUG- -5'
19121 3' -59.1 NC_004684.1 + 11918 0.67 0.45271
Target:  5'- cACCACCgacaGCCAGGGccguccgcUGGCcauggucgccagCCUGGCAccuGCg -3'
miRNA:   3'- -UGGUGG----UGGUUCC--------ACCG------------GGACCGU---UG- -5'
19121 3' -59.1 NC_004684.1 + 12070 0.72 0.227682
Target:  5'- gGCCGCCGagcgcgaCGAGGUgcuGGCCCgcgcGGCGGCc -3'
miRNA:   3'- -UGGUGGUg------GUUCCA---CCGGGa---CCGUUG- -5'
19121 3' -59.1 NC_004684.1 + 12206 0.73 0.1934
Target:  5'- cGCCGCCGCCAGcGGUGcGUUCUccgggggugcuuccGGCAGCg -3'
miRNA:   3'- -UGGUGGUGGUU-CCAC-CGGGA--------------CCGUUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.