miRNA display CGI


Results 1 - 20 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19121 3' -59.1 NC_004684.1 + 189 1.09 0.000418
Target:  5'- gACCACCACCAAGGUGGCCCUGGCAACg -3'
miRNA:   3'- -UGGUGGUGGUUCCACCGGGACCGUUG- -5'
19121 3' -59.1 NC_004684.1 + 395 0.67 0.472204
Target:  5'- gAUCACCGCCGuGGcgGGCaagCUgGGCGACu -3'
miRNA:   3'- -UGGUGGUGGUuCCa-CCGg--GA-CCGUUG- -5'
19121 3' -59.1 NC_004684.1 + 557 0.76 0.120281
Target:  5'- gGCCGCCACCGAGGaggacaaGGCCgaGGCcACc -3'
miRNA:   3'- -UGGUGGUGGUUCCa------CCGGgaCCGuUG- -5'
19121 3' -59.1 NC_004684.1 + 704 0.71 0.285416
Target:  5'- gACCGCCGCC-GGGUGGgaagaCCUGgGCAc- -3'
miRNA:   3'- -UGGUGGUGGuUCCACCg----GGAC-CGUug -5'
19121 3' -59.1 NC_004684.1 + 746 0.74 0.161986
Target:  5'- gGCCGCCGCCGAGGccaucgUGGCCaccaaGGCcGCa -3'
miRNA:   3'- -UGGUGGUGGUUCC------ACCGGga---CCGuUG- -5'
19121 3' -59.1 NC_004684.1 + 773 0.66 0.512399
Target:  5'- -aCACCGCCGAGGcaccgugaaugaUGGCCCUcaccuGCAc- -3'
miRNA:   3'- ugGUGGUGGUUCC------------ACCGGGAc----CGUug -5'
19121 3' -59.1 NC_004684.1 + 902 0.73 0.200083
Target:  5'- gGCCGCCGCCAAGGccuagccGCCaccgggUGGCGGCg -3'
miRNA:   3'- -UGGUGGUGGUUCCac-----CGGg-----ACCGUUG- -5'
19121 3' -59.1 NC_004684.1 + 1455 0.68 0.404184
Target:  5'- gACCACCuggucgagaccggGCCGGacgugcccggugcGGcGGCCCUGGUGGCc -3'
miRNA:   3'- -UGGUGG-------------UGGUU-------------CCaCCGGGACCGUUG- -5'
19121 3' -59.1 NC_004684.1 + 1480 0.69 0.337879
Target:  5'- gACCuACgCGCCgGAGGUGGCCCgccuguUGcGCGACc -3'
miRNA:   3'- -UGG-UG-GUGG-UUCCACCGGG------AC-CGUUG- -5'
19121 3' -59.1 NC_004684.1 + 1529 0.69 0.354102
Target:  5'- aACC-CCuCCGAGGUGGCCaccaGCGGCc -3'
miRNA:   3'- -UGGuGGuGGUUCCACCGGgac-CGUUG- -5'
19121 3' -59.1 NC_004684.1 + 1741 0.71 0.285415
Target:  5'- cACCACCACCGAGGgcGGUCCgcaccuGCAu- -3'
miRNA:   3'- -UGGUGGUGGUUCCa-CCGGGac----CGUug -5'
19121 3' -59.1 NC_004684.1 + 2032 0.8 0.061588
Target:  5'- gACCGUCGCCcuGGUGGCCCUGGgGGCc -3'
miRNA:   3'- -UGGUGGUGGuuCCACCGGGACCgUUG- -5'
19121 3' -59.1 NC_004684.1 + 2668 0.72 0.216274
Target:  5'- gGCCACaagauggacCCGAuGGaGGCCCUGGCGGCc -3'
miRNA:   3'- -UGGUGgu-------GGUU-CCaCCGGGACCGUUG- -5'
19121 3' -59.1 NC_004684.1 + 3404 0.68 0.397015
Target:  5'- gACCGCCGCCAAGGUgauggaGGUCUaccgcaaGGaCGACa -3'
miRNA:   3'- -UGGUGGUGGUUCCA------CCGGGa------CC-GUUG- -5'
19121 3' -59.1 NC_004684.1 + 3512 0.68 0.405989
Target:  5'- cGCCGCaauCGCCGacGGGUGGgccgaCCUGGCGguGCa -3'
miRNA:   3'- -UGGUG---GUGGU--UCCACCg----GGACCGU--UG- -5'
19121 3' -59.1 NC_004684.1 + 3652 0.7 0.314571
Target:  5'- gGCCGCCcgguGCCGGgucaucguacGGUGGCCC-GGCAc- -3'
miRNA:   3'- -UGGUGG----UGGUU----------CCACCGGGaCCGUug -5'
19121 3' -59.1 NC_004684.1 + 3807 0.71 0.258435
Target:  5'- aACCACCGCCGcgccgcgcAGGccgaUGGaCCUgaUGGCAGCg -3'
miRNA:   3'- -UGGUGGUGGU--------UCC----ACC-GGG--ACCGUUG- -5'
19121 3' -59.1 NC_004684.1 + 4480 0.78 0.096468
Target:  5'- gUCACCgGCCAGGGccUGGCCCgccgUGGCAACg -3'
miRNA:   3'- uGGUGG-UGGUUCC--ACCGGG----ACCGUUG- -5'
19121 3' -59.1 NC_004684.1 + 4987 0.7 0.327627
Target:  5'- gGCCACUccgcgacguaccggGCgAAGGUGGaCCUguggaUGGCAACg -3'
miRNA:   3'- -UGGUGG--------------UGgUUCCACC-GGG-----ACCGUUG- -5'
19121 3' -59.1 NC_004684.1 + 5165 0.67 0.491108
Target:  5'- cGCUACC-CCGaugucgAGGUGGCgCUGGUuggccagGACg -3'
miRNA:   3'- -UGGUGGuGGU------UCCACCGgGACCG-------UUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.