miRNA display CGI


Results 1 - 20 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19121 3' -59.1 NC_004684.1 + 189 1.09 0.000418
Target:  5'- gACCACCACCAAGGUGGCCCUGGCAACg -3'
miRNA:   3'- -UGGUGGUGGUUCCACCGGGACCGUUG- -5'
19121 3' -59.1 NC_004684.1 + 30610 0.84 0.032313
Target:  5'- aGCCGCCGCCGaccagcgucggcaccGGGcgcGGCCCUGGCGGCg -3'
miRNA:   3'- -UGGUGGUGGU---------------UCCa--CCGGGACCGUUG- -5'
19121 3' -59.1 NC_004684.1 + 2032 0.8 0.061588
Target:  5'- gACCGUCGCCcuGGUGGCCCUGGgGGCc -3'
miRNA:   3'- -UGGUGGUGGuuCCACCGGGACCgUUG- -5'
19121 3' -59.1 NC_004684.1 + 66476 0.79 0.072947
Target:  5'- cGCCGCCACCc-GGUggcggcuaGGCCUUGGCGGCg -3'
miRNA:   3'- -UGGUGGUGGuuCCA--------CCGGGACCGUUG- -5'
19121 3' -59.1 NC_004684.1 + 15509 0.79 0.077163
Target:  5'- uGCCACCACCGAGGccgaGGCCUUGGagguGCu -3'
miRNA:   3'- -UGGUGGUGGUUCCa---CCGGGACCgu--UG- -5'
19121 3' -59.1 NC_004684.1 + 6069 0.79 0.077163
Target:  5'- -aCGCCGCCGAGGgcggcGGCCC-GGCGGCg -3'
miRNA:   3'- ugGUGGUGGUUCCa----CCGGGaCCGUUG- -5'
19121 3' -59.1 NC_004684.1 + 25338 0.78 0.096468
Target:  5'- gGCgGCCuCCccGGUGGCCUUGGCGGCg -3'
miRNA:   3'- -UGgUGGuGGuuCCACCGGGACCGUUG- -5'
19121 3' -59.1 NC_004684.1 + 4480 0.78 0.096468
Target:  5'- gUCACCgGCCAGGGccUGGCCCgccgUGGCAACg -3'
miRNA:   3'- uGGUGG-UGGUUCC--ACCGGG----ACCGUUG- -5'
19121 3' -59.1 NC_004684.1 + 62457 0.77 0.101966
Target:  5'- uGCCAgCGCUccggGAGGUGGCCgUUGGCGACc -3'
miRNA:   3'- -UGGUgGUGG----UUCCACCGG-GACCGUUG- -5'
19121 3' -59.1 NC_004684.1 + 20309 0.76 0.113859
Target:  5'- -gCACCGCCGuucuGGU-GCCCUGGCAAUg -3'
miRNA:   3'- ugGUGGUGGUu---CCAcCGGGACCGUUG- -5'
19121 3' -59.1 NC_004684.1 + 557 0.76 0.120281
Target:  5'- gGCCGCCACCGAGGaggacaaGGCCgaGGCcACc -3'
miRNA:   3'- -UGGUGGUGGUUCCa------CCGGgaCCGuUG- -5'
19121 3' -59.1 NC_004684.1 + 38832 0.75 0.134145
Target:  5'- uGCCcgACgGCCu-GGUGGCCCUGGCGc- -3'
miRNA:   3'- -UGG--UGgUGGuuCCACCGGGACCGUug -5'
19121 3' -59.1 NC_004684.1 + 51363 0.75 0.137834
Target:  5'- cGCCcaguCCACCGAGGUgaGGCCUUGGCc-- -3'
miRNA:   3'- -UGGu---GGUGGUUCCA--CCGGGACCGuug -5'
19121 3' -59.1 NC_004684.1 + 25295 0.75 0.137834
Target:  5'- gGCCA-CACCAGGcggcggcgguucGUcGGCCCUGGCGGCg -3'
miRNA:   3'- -UGGUgGUGGUUC------------CA-CCGGGACCGUUG- -5'
19121 3' -59.1 NC_004684.1 + 45216 0.75 0.145493
Target:  5'- gUCGCCGCCGccGUGGCCCUGcGguGCu -3'
miRNA:   3'- uGGUGGUGGUucCACCGGGAC-CguUG- -5'
19121 3' -59.1 NC_004684.1 + 26435 0.75 0.145493
Target:  5'- uUCGCCGCC--GGUGGCCCgguguacGGCGGCa -3'
miRNA:   3'- uGGUGGUGGuuCCACCGGGa------CCGUUG- -5'
19121 3' -59.1 NC_004684.1 + 61314 0.75 0.149467
Target:  5'- cACCGCCGCCGGGccgccGCCCUcGGCGGCg -3'
miRNA:   3'- -UGGUGGUGGUUCcac--CGGGA-CCGUUG- -5'
19121 3' -59.1 NC_004684.1 + 54279 0.74 0.157711
Target:  5'- cGCCGCCACCcggccgGGGGUgcgcgcaucGGCCCccuUGGCGGCu -3'
miRNA:   3'- -UGGUGGUGG------UUCCA---------CCGGG---ACCGUUG- -5'
19121 3' -59.1 NC_004684.1 + 746 0.74 0.161986
Target:  5'- gGCCGCCGCCGAGGccaucgUGGCCaccaaGGCcGCa -3'
miRNA:   3'- -UGGUGGUGGUUCC------ACCGGga---CCGuUG- -5'
19121 3' -59.1 NC_004684.1 + 27021 0.74 0.166365
Target:  5'- cGCCACCGCCGAGGcccccaaGGCCaaGGCcGCc -3'
miRNA:   3'- -UGGUGGUGGUUCCa------CCGGgaCCGuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.