miRNA display CGI


Results 1 - 20 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19121 3' -59.1 NC_004684.1 + 55867 0.71 0.278468
Target:  5'- gUCGaCGCCAAGGUGGCCggGGCAu- -3'
miRNA:   3'- uGGUgGUGGUUCCACCGGgaCCGUug -5'
19121 3' -59.1 NC_004684.1 + 65328 0.72 0.216274
Target:  5'- gGCCAgCGCCAGGcaGGCCacgaUGGCGGCc -3'
miRNA:   3'- -UGGUgGUGGUUCcaCCGGg---ACCGUUG- -5'
19121 3' -59.1 NC_004684.1 + 62606 0.72 0.227682
Target:  5'- gGCCACCgcGCCGAGGc-GCUugCUGGCGACg -3'
miRNA:   3'- -UGGUGG--UGGUUCCacCGG--GACCGUUG- -5'
19121 3' -59.1 NC_004684.1 + 12070 0.72 0.227682
Target:  5'- gGCCGCCGagcgcgaCGAGGUgcuGGCCCgcgcGGCGGCc -3'
miRNA:   3'- -UGGUGGUg------GUUCCA---CCGGGa---CCGUUG- -5'
19121 3' -59.1 NC_004684.1 + 9125 0.72 0.239594
Target:  5'- cAUCACCGCCGAGGccaUGGUcaagaugcucggCCUGGcCGACg -3'
miRNA:   3'- -UGGUGGUGGUUCC---ACCG------------GGACC-GUUG- -5'
19121 3' -59.1 NC_004684.1 + 22673 0.72 0.245744
Target:  5'- gGCCGCagaagCGCuCAAGGacaUGGCCCcGGCGGCg -3'
miRNA:   3'- -UGGUG-----GUG-GUUCC---ACCGGGaCCGUUG- -5'
19121 3' -59.1 NC_004684.1 + 61168 0.71 0.258435
Target:  5'- aGCCACCcgGCCAGgucggcgggguuGGUGGCCUcGGCGuACa -3'
miRNA:   3'- -UGGUGG--UGGUU------------CCACCGGGaCCGU-UG- -5'
19121 3' -59.1 NC_004684.1 + 13744 0.71 0.264978
Target:  5'- uGCCACCACCucGGUGcucaacGgCCUGGCGc- -3'
miRNA:   3'- -UGGUGGUGGuuCCAC------CgGGACCGUug -5'
19121 3' -59.1 NC_004684.1 + 53348 0.71 0.271656
Target:  5'- cGCCACCGCCuugcuggucGGGUcGCCCUGGauGCg -3'
miRNA:   3'- -UGGUGGUGGu--------UCCAcCGGGACCguUG- -5'
19121 3' -59.1 NC_004684.1 + 55912 0.73 0.210756
Target:  5'- uACCGCCggagcuggugGCCAAGGUGGaCCggGGCGAg -3'
miRNA:   3'- -UGGUGG----------UGGUUCCACCgGGa-CCGUUg -5'
19121 3' -59.1 NC_004684.1 + 15167 0.73 0.194415
Target:  5'- cGCCGCCGCCAcgcaccuGGGacUGGUgCUGcGCAGCg -3'
miRNA:   3'- -UGGUGGUGGU-------UCC--ACCGgGAC-CGUUG- -5'
19121 3' -59.1 NC_004684.1 + 54279 0.74 0.157711
Target:  5'- cGCCGCCACCcggccgGGGGUgcgcgcaucGGCCCccuUGGCGGCu -3'
miRNA:   3'- -UGGUGGUGG------UUCCA---------CCGGG---ACCGUUG- -5'
19121 3' -59.1 NC_004684.1 + 66476 0.79 0.072947
Target:  5'- cGCCGCCACCc-GGUggcggcuaGGCCUUGGCGGCg -3'
miRNA:   3'- -UGGUGGUGGuuCCA--------CCGGGACCGUUG- -5'
19121 3' -59.1 NC_004684.1 + 25338 0.78 0.096468
Target:  5'- gGCgGCCuCCccGGUGGCCUUGGCGGCg -3'
miRNA:   3'- -UGgUGGuGGuuCCACCGGGACCGUUG- -5'
19121 3' -59.1 NC_004684.1 + 62457 0.77 0.101966
Target:  5'- uGCCAgCGCUccggGAGGUGGCCgUUGGCGACc -3'
miRNA:   3'- -UGGUgGUGG----UUCCACCGG-GACCGUUG- -5'
19121 3' -59.1 NC_004684.1 + 38832 0.75 0.134145
Target:  5'- uGCCcgACgGCCu-GGUGGCCCUGGCGc- -3'
miRNA:   3'- -UGG--UGgUGGuuCCACCGGGACCGUug -5'
19121 3' -59.1 NC_004684.1 + 25295 0.75 0.137834
Target:  5'- gGCCA-CACCAGGcggcggcgguucGUcGGCCCUGGCGGCg -3'
miRNA:   3'- -UGGUgGUGGUUC------------CA-CCGGGACCGUUG- -5'
19121 3' -59.1 NC_004684.1 + 51363 0.75 0.137834
Target:  5'- cGCCcaguCCACCGAGGUgaGGCCUUGGCc-- -3'
miRNA:   3'- -UGGu---GGUGGUUCCA--CCGGGACCGuug -5'
19121 3' -59.1 NC_004684.1 + 26435 0.75 0.145493
Target:  5'- uUCGCCGCC--GGUGGCCCgguguacGGCGGCa -3'
miRNA:   3'- uGGUGGUGGuuCCACCGGGa------CCGUUG- -5'
19121 3' -59.1 NC_004684.1 + 61314 0.75 0.149467
Target:  5'- cACCGCCGCCGGGccgccGCCCUcGGCGGCg -3'
miRNA:   3'- -UGGUGGUGGUUCcac--CGGGA-CCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.