miRNA display CGI


Results 21 - 40 of 159 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19122 3' -57.1 NC_004684.1 + 21693 0.66 0.652612
Target:  5'- aUGUGCGaCAcCGUGGUCaUGGcuCGGCCu -3'
miRNA:   3'- -ACGCGC-GUaGCACCGGcACCu-GUUGG- -5'
19122 3' -57.1 NC_004684.1 + 21302 0.66 0.66328
Target:  5'- cUGCGCaacGCAggCGaGGCgGUGGuccggcGCGACCg -3'
miRNA:   3'- -ACGCG---CGUa-GCaCCGgCACC------UGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 5721 0.66 0.705574
Target:  5'- cGCGcCGCAgaugcCGUucGCCauccacaaGUGGACGGCCa -3'
miRNA:   3'- aCGC-GCGUa----GCAc-CGG--------CACCUGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 676 0.66 0.681345
Target:  5'- aGCGUGCGccugauccUCGgccccgaggucagccGCCgGUGGACGGCCu -3'
miRNA:   3'- aCGCGCGU--------AGCac-------------CGG-CACCUGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 10233 0.66 0.695076
Target:  5'- gGUGCGCGagcaGcUGGCCGUgcgcguggagcGGGcCAACCa -3'
miRNA:   3'- aCGCGCGUag--C-ACCGGCA-----------CCU-GUUGG- -5'
19122 3' -57.1 NC_004684.1 + 65708 0.66 0.695076
Target:  5'- aUGCGCGCcagcucGGCCugGUGGGCGaaaaacGCCa -3'
miRNA:   3'- -ACGCGCGuagca-CCGG--CACCUGU------UGG- -5'
19122 3' -57.1 NC_004684.1 + 7664 0.66 0.66328
Target:  5'- gGCGUGgAUCccgcucUGGCauugGGACAACCg -3'
miRNA:   3'- aCGCGCgUAGc-----ACCGgca-CCUGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 21490 0.66 0.695076
Target:  5'- aGCGCaccaaCAUCGUGuucGCCGccagcgUGGACGGCg -3'
miRNA:   3'- aCGCGc----GUAGCAC---CGGC------ACCUGUUGg -5'
19122 3' -57.1 NC_004684.1 + 7647 0.66 0.684521
Target:  5'- gGCGgGCGUgGUGaCCGggucGGCGGCCu -3'
miRNA:   3'- aCGCgCGUAgCACcGGCac--CUGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 11223 0.66 0.684521
Target:  5'- aGCGcCGcCGUCGUcGCCGUcGuCGGCCa -3'
miRNA:   3'- aCGC-GC-GUAGCAcCGGCAcCuGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 34873 0.67 0.641928
Target:  5'- uUGUGCGCGaCGUgaaGGCCuUGGcCAACg -3'
miRNA:   3'- -ACGCGCGUaGCA---CCGGcACCuGUUGg -5'
19122 3' -57.1 NC_004684.1 + 59948 0.67 0.606658
Target:  5'- cGUGCGCGUUGUGcuggcggcgcucguGCCGcacccGGACcuuGCCg -3'
miRNA:   3'- aCGCGCGUAGCAC--------------CGGCa----CCUGu--UGG- -5'
19122 3' -57.1 NC_004684.1 + 3830 0.67 0.599195
Target:  5'- gGCGCGUucggCGU-GCCGaccGACGACCa -3'
miRNA:   3'- aCGCGCGua--GCAcCGGCac-CUGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 9564 0.67 0.628026
Target:  5'- gUGCGcCGCGaacaCGUGGCCGaccugauccguggcUgGGACAGCa -3'
miRNA:   3'- -ACGC-GCGUa---GCACCGGC--------------A-CCUGUUGg -5'
19122 3' -57.1 NC_004684.1 + 63177 0.67 0.609859
Target:  5'- gGCGCauGCAgUCGUGGCUGgcGGugAucagaACCa -3'
miRNA:   3'- aCGCG--CGU-AGCACCGGCa-CCugU-----UGG- -5'
19122 3' -57.1 NC_004684.1 + 24606 0.67 0.631235
Target:  5'- --aGCGgA-CGUGGCgCGcaUGGGCGGCCa -3'
miRNA:   3'- acgCGCgUaGCACCG-GC--ACCUGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 36419 0.67 0.631235
Target:  5'- aGCGCcacgGCuUCGUGGUgGacGACGACCc -3'
miRNA:   3'- aCGCG----CGuAGCACCGgCacCUGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 66266 0.67 0.631235
Target:  5'- aGCGCgGCGUCGUc-CCaGcGGACGGCCa -3'
miRNA:   3'- aCGCG-CGUAGCAccGG-CaCCUGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 20051 0.67 0.640859
Target:  5'- aGCGCggugaacGCGuUCGUGGCCGcgcucaagcUGGcguuCAACCc -3'
miRNA:   3'- aCGCG-------CGU-AGCACCGGC---------ACCu---GUUGG- -5'
19122 3' -57.1 NC_004684.1 + 4142 0.67 0.588557
Target:  5'- --aGCGCAUCGgcgcGGacaCCGUGGACGcgaucaugGCCc -3'
miRNA:   3'- acgCGCGUAGCa---CC---GGCACCUGU--------UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.