Results 1 - 20 of 159 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19122 | 3' | -57.1 | NC_004684.1 | + | 25308 | 0.66 | 0.684521 |
Target: 5'- gGCgGCGguUCGUcGGCCcUGGcggcguaugGCGGCCu -3' miRNA: 3'- aCG-CGCguAGCA-CCGGcACC---------UGUUGG- -5' |
|||||||
19122 | 3' | -57.1 | NC_004684.1 | + | 7664 | 0.66 | 0.66328 |
Target: 5'- gGCGUGgAUCccgcucUGGCauugGGACAACCg -3' miRNA: 3'- aCGCGCgUAGc-----ACCGgca-CCUGUUGG- -5' |
|||||||
19122 | 3' | -57.1 | NC_004684.1 | + | 19685 | 0.66 | 0.661148 |
Target: 5'- gGCGCgGCGgcaaggCcUGGCCGagccaagaccugGGACGGCCa -3' miRNA: 3'- aCGCG-CGUa-----GcACCGGCa-----------CCUGUUGG- -5' |
|||||||
19122 | 3' | -57.1 | NC_004684.1 | + | 21302 | 0.66 | 0.66328 |
Target: 5'- cUGCGCaacGCAggCGaGGCgGUGGuccggcGCGACCg -3' miRNA: 3'- -ACGCG---CGUa-GCaCCGgCACC------UGUUGG- -5' |
|||||||
19122 | 3' | -57.1 | NC_004684.1 | + | 21693 | 0.66 | 0.652612 |
Target: 5'- aUGUGCGaCAcCGUGGUCaUGGcuCGGCCu -3' miRNA: 3'- -ACGCGC-GUaGCACCGGcACCu-GUUGG- -5' |
|||||||
19122 | 3' | -57.1 | NC_004684.1 | + | 676 | 0.66 | 0.681345 |
Target: 5'- aGCGUGCGccugauccUCGgccccgaggucagccGCCgGUGGACGGCCu -3' miRNA: 3'- aCGCGCGU--------AGCac-------------CGG-CACCUGUUGG- -5' |
|||||||
19122 | 3' | -57.1 | NC_004684.1 | + | 47129 | 0.66 | 0.652613 |
Target: 5'- cGUGCGCcUCgGUGGC-GUaGGCGGCCc -3' miRNA: 3'- aCGCGCGuAG-CACCGgCAcCUGUUGG- -5' |
|||||||
19122 | 3' | -57.1 | NC_004684.1 | + | 52215 | 0.66 | 0.66328 |
Target: 5'- uUGCGaaucuccccgGCGUCGaucaGGCCGUGGu--GCCa -3' miRNA: 3'- -ACGCg---------CGUAGCa---CCGGCACCuguUGG- -5' |
|||||||
19122 | 3' | -57.1 | NC_004684.1 | + | 49544 | 0.66 | 0.684521 |
Target: 5'- gUGUGCGCG--GUGGCCGacuucGGGCuggcguGGCCu -3' miRNA: 3'- -ACGCGCGUagCACCGGCa----CCUG------UUGG- -5' |
|||||||
19122 | 3' | -57.1 | NC_004684.1 | + | 18585 | 0.66 | 0.652613 |
Target: 5'- -cCGCGC-UgGUGGCUcUGGACGAUg -3' miRNA: 3'- acGCGCGuAgCACCGGcACCUGUUGg -5' |
|||||||
19122 | 3' | -57.1 | NC_004684.1 | + | 5892 | 0.66 | 0.663279 |
Target: 5'- gGCGCGCAUCGaGcGCCGccgccUGcGCGGCg -3' miRNA: 3'- aCGCGCGUAGCaC-CGGC-----ACcUGUUGg -5' |
|||||||
19122 | 3' | -57.1 | NC_004684.1 | + | 30211 | 0.66 | 0.663279 |
Target: 5'- cGCGCGCGUCGaugcucGGCgcgaCGUGGcccuCGGCg -3' miRNA: 3'- aCGCGCGUAGCa-----CCG----GCACCu---GUUGg -5' |
|||||||
19122 | 3' | -57.1 | NC_004684.1 | + | 42184 | 0.66 | 0.652613 |
Target: 5'- cUGCGCggugaGCAgUG-GGCCGUGGAgcuggUGGCCg -3' miRNA: 3'- -ACGCG-----CGUaGCaCCGGCACCU-----GUUGG- -5' |
|||||||
19122 | 3' | -57.1 | NC_004684.1 | + | 50015 | 0.66 | 0.690861 |
Target: 5'- gUGUGCGCAccgucggcggcagCGUGGCCGgugccUGGcuccaGGCCa -3' miRNA: 3'- -ACGCGCGUa------------GCACCGGC-----ACCug---UUGG- -5' |
|||||||
19122 | 3' | -57.1 | NC_004684.1 | + | 65708 | 0.66 | 0.695076 |
Target: 5'- aUGCGCGCcagcucGGCCugGUGGGCGaaaaacGCCa -3' miRNA: 3'- -ACGCGCGuagca-CCGG--CACCUGU------UGG- -5' |
|||||||
19122 | 3' | -57.1 | NC_004684.1 | + | 2403 | 0.66 | 0.695076 |
Target: 5'- gGCGUGCAcgUCGUGGCacCGUuccagaccgGcGACAagGCCg -3' miRNA: 3'- aCGCGCGU--AGCACCG--GCA---------C-CUGU--UGG- -5' |
|||||||
19122 | 3' | -57.1 | NC_004684.1 | + | 38872 | 0.66 | 0.695076 |
Target: 5'- cGCGCGguUCaacGCCGccacgcUGGACAGCg -3' miRNA: 3'- aCGCGCguAGcacCGGC------ACCUGUUGg -5' |
|||||||
19122 | 3' | -57.1 | NC_004684.1 | + | 5721 | 0.66 | 0.705574 |
Target: 5'- cGCGcCGCAgaugcCGUucGCCauccacaaGUGGACGGCCa -3' miRNA: 3'- aCGC-GCGUa----GCAc-CGG--------CACCUGUUGG- -5' |
|||||||
19122 | 3' | -57.1 | NC_004684.1 | + | 34839 | 0.66 | 0.652613 |
Target: 5'- cUGCuGCGCAUgca-GCCGUGGGCGguuCCg -3' miRNA: 3'- -ACG-CGCGUAgcacCGGCACCUGUu--GG- -5' |
|||||||
19122 | 3' | -57.1 | NC_004684.1 | + | 65201 | 0.66 | 0.705574 |
Target: 5'- --gGCGUA--GUGGCCGUGcGGC-ACCu -3' miRNA: 3'- acgCGCGUagCACCGGCAC-CUGuUGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home