miRNA display CGI


Results 1 - 20 of 159 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19122 3' -57.1 NC_004684.1 + 452 1.12 0.000536
Target:  5'- cUGCGCGCAUCGUGGCCGUGGACAACCg -3'
miRNA:   3'- -ACGCGCGUAGCACCGGCACCUGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 19121 0.81 0.087877
Target:  5'- cGUGCGCAUgGUGGCCGacGACAACg -3'
miRNA:   3'- aCGCGCGUAgCACCGGCacCUGUUGg -5'
19122 3' -57.1 NC_004684.1 + 15584 0.81 0.095491
Target:  5'- cGCGCGCggCcUGGCCGUGGACcggGACUa -3'
miRNA:   3'- aCGCGCGuaGcACCGGCACCUG---UUGG- -5'
19122 3' -57.1 NC_004684.1 + 30149 0.79 0.125604
Target:  5'- gUGUGCGCGUC--GGCCaGUGGGCGAUCa -3'
miRNA:   3'- -ACGCGCGUAGcaCCGG-CACCUGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 1297 0.79 0.129059
Target:  5'- cGCGCGCGacgCGUGGCC--GGACAugCg -3'
miRNA:   3'- aCGCGCGUa--GCACCGGcaCCUGUugG- -5'
19122 3' -57.1 NC_004684.1 + 23549 0.77 0.164315
Target:  5'- gGCG-GCAUCGgucgcGGCC-UGGACAGCCu -3'
miRNA:   3'- aCGCgCGUAGCa----CCGGcACCUGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 23756 0.76 0.187457
Target:  5'- gGUGCGCAguUCG-GGCCGUGGggcGCGGCg -3'
miRNA:   3'- aCGCGCGU--AGCaCCGGCACC---UGUUGg -5'
19122 3' -57.1 NC_004684.1 + 61676 0.76 0.207456
Target:  5'- gUGCGCcugcacgccauugGCGUCG-GuGCCGUGGGCAgGCCg -3'
miRNA:   3'- -ACGCG-------------CGUAGCaC-CGGCACCUGU-UGG- -5'
19122 3' -57.1 NC_004684.1 + 40706 0.75 0.224645
Target:  5'- aGCuGgGCGgcgGUGGCCG-GGACGACCa -3'
miRNA:   3'- aCG-CgCGUag-CACCGGCaCCUGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 66136 0.75 0.236365
Target:  5'- aGCcaGCGCAUCuG-GGCCGgggccGGGCGACCg -3'
miRNA:   3'- aCG--CGCGUAG-CaCCGGCa----CCUGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 29695 0.75 0.236365
Target:  5'- gUGCGCGCGUCaacGUCGUGGGCcagAACCu -3'
miRNA:   3'- -ACGCGCGUAGcacCGGCACCUG---UUGG- -5'
19122 3' -57.1 NC_004684.1 + 40025 0.74 0.254902
Target:  5'- gGCGCG-AUgGUGGCCuUGGGCAucauGCCg -3'
miRNA:   3'- aCGCGCgUAgCACCGGcACCUGU----UGG- -5'
19122 3' -57.1 NC_004684.1 + 48961 0.74 0.261341
Target:  5'- gGCGgGCGggGUGGCCG-GGGCGGgCg -3'
miRNA:   3'- aCGCgCGUagCACCGGCaCCUGUUgG- -5'
19122 3' -57.1 NC_004684.1 + 15375 0.74 0.267911
Target:  5'- cGCGCGCuggugAUCGgcuacgaGGCCGccaucgGGGCGGCCa -3'
miRNA:   3'- aCGCGCG-----UAGCa------CCGGCa-----CCUGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 36871 0.74 0.267911
Target:  5'- gGCGacauGC-UgGUGGCCGUGGucgGCAACCa -3'
miRNA:   3'- aCGCg---CGuAgCACCGGCACC---UGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 54629 0.74 0.274615
Target:  5'- cGCGCGCGagGacggGGUguUGUGGGCGACCc -3'
miRNA:   3'- aCGCGCGUagCa---CCG--GCACCUGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 16791 0.74 0.274615
Target:  5'- gUGCgGCGCGUCGU-GUgGUGGGCGcGCCa -3'
miRNA:   3'- -ACG-CGCGUAGCAcCGgCACCUGU-UGG- -5'
19122 3' -57.1 NC_004684.1 + 57970 0.73 0.281452
Target:  5'- gGUGCGCA-CGcugcUGGCCGaGGACAugACCa -3'
miRNA:   3'- aCGCGCGUaGC----ACCGGCaCCUGU--UGG- -5'
19122 3' -57.1 NC_004684.1 + 20973 0.73 0.295529
Target:  5'- aUGCGCcgggaCAUgcUGGCCGUGGACccGACCa -3'
miRNA:   3'- -ACGCGc----GUAgcACCGGCACCUG--UUGG- -5'
19122 3' -57.1 NC_004684.1 + 14380 0.73 0.310149
Target:  5'- aGCGCGC-UgGUGGCgcUGGACGACg -3'
miRNA:   3'- aCGCGCGuAgCACCGgcACCUGUUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.