Results 1 - 20 of 159 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19122 | 3' | -57.1 | NC_004684.1 | + | 62461 | 0.71 | 0.365596 |
Target: 5'- aGCGCuccGgGagGUGGCCGUuGGCGACCg -3' miRNA: 3'- aCGCG---CgUagCACCGGCAcCUGUUGG- -5' |
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19122 | 3' | -57.1 | NC_004684.1 | + | 54629 | 0.74 | 0.274615 |
Target: 5'- cGCGCGCGagGacggGGUguUGUGGGCGACCc -3' miRNA: 3'- aCGCGCGUagCa---CCG--GCACCUGUUGG- -5' |
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19122 | 3' | -57.1 | NC_004684.1 | + | 57970 | 0.73 | 0.281452 |
Target: 5'- gGUGCGCA-CGcugcUGGCCGaGGACAugACCa -3' miRNA: 3'- aCGCGCGUaGC----ACCGGCaCCUGU--UGG- -5' |
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19122 | 3' | -57.1 | NC_004684.1 | + | 14380 | 0.73 | 0.310149 |
Target: 5'- aGCGCGC-UgGUGGCgcUGGACGACg -3' miRNA: 3'- aCGCGCGuAgCACCGgcACCUGUUGg -5' |
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19122 | 3' | -57.1 | NC_004684.1 | + | 51196 | 0.73 | 0.317663 |
Target: 5'- cGCGCGCccuggccguacAUCGUGGCCagcaGGAUcACCu -3' miRNA: 3'- aCGCGCG-----------UAGCACCGGca--CCUGuUGG- -5' |
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19122 | 3' | -57.1 | NC_004684.1 | + | 15631 | 0.72 | 0.325313 |
Target: 5'- cGCGCGCGagGccgGGuuGcUGGACGACUa -3' miRNA: 3'- aCGCGCGUagCa--CCggC-ACCUGUUGG- -5' |
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19122 | 3' | -57.1 | NC_004684.1 | + | 60953 | 0.72 | 0.341021 |
Target: 5'- aUGCGUGCuguacaccUCGUGGCUGgUGGcguCGGCCu -3' miRNA: 3'- -ACGCGCGu-------AGCACCGGC-ACCu--GUUGG- -5' |
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19122 | 3' | -57.1 | NC_004684.1 | + | 3490 | 0.72 | 0.35727 |
Target: 5'- gGC-CGCAcCGUGGCCGccaGGAC-GCCg -3' miRNA: 3'- aCGcGCGUaGCACCGGCa--CCUGuUGG- -5' |
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19122 | 3' | -57.1 | NC_004684.1 | + | 62983 | 0.72 | 0.35727 |
Target: 5'- gGUGCGCA-CGUGGCCgGUGGccgggaacGCGAUg -3' miRNA: 3'- aCGCGCGUaGCACCGG-CACC--------UGUUGg -5' |
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19122 | 3' | -57.1 | NC_004684.1 | + | 16791 | 0.74 | 0.274615 |
Target: 5'- gUGCgGCGCGUCGU-GUgGUGGGCGcGCCa -3' miRNA: 3'- -ACG-CGCGUAGCAcCGgCACCUGU-UGG- -5' |
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19122 | 3' | -57.1 | NC_004684.1 | + | 15375 | 0.74 | 0.267911 |
Target: 5'- cGCGCGCuggugAUCGgcuacgaGGCCGccaucgGGGCGGCCa -3' miRNA: 3'- aCGCGCG-----UAGCa------CCGGCa-----CCUGUUGG- -5' |
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19122 | 3' | -57.1 | NC_004684.1 | + | 36871 | 0.74 | 0.267911 |
Target: 5'- gGCGacauGC-UgGUGGCCGUGGucgGCAACCa -3' miRNA: 3'- aCGCg---CGuAgCACCGGCACC---UGUUGG- -5' |
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19122 | 3' | -57.1 | NC_004684.1 | + | 30149 | 0.79 | 0.125604 |
Target: 5'- gUGUGCGCGUC--GGCCaGUGGGCGAUCa -3' miRNA: 3'- -ACGCGCGUAGcaCCGG-CACCUGUUGG- -5' |
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19122 | 3' | -57.1 | NC_004684.1 | + | 1297 | 0.79 | 0.129059 |
Target: 5'- cGCGCGCGacgCGUGGCC--GGACAugCg -3' miRNA: 3'- aCGCGCGUa--GCACCGGcaCCUGUugG- -5' |
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19122 | 3' | -57.1 | NC_004684.1 | + | 23549 | 0.77 | 0.164315 |
Target: 5'- gGCG-GCAUCGgucgcGGCC-UGGACAGCCu -3' miRNA: 3'- aCGCgCGUAGCa----CCGGcACCUGUUGG- -5' |
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19122 | 3' | -57.1 | NC_004684.1 | + | 23756 | 0.76 | 0.187457 |
Target: 5'- gGUGCGCAguUCG-GGCCGUGGggcGCGGCg -3' miRNA: 3'- aCGCGCGU--AGCaCCGGCACC---UGUUGg -5' |
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19122 | 3' | -57.1 | NC_004684.1 | + | 61676 | 0.76 | 0.207456 |
Target: 5'- gUGCGCcugcacgccauugGCGUCG-GuGCCGUGGGCAgGCCg -3' miRNA: 3'- -ACGCG-------------CGUAGCaC-CGGCACCUGU-UGG- -5' |
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19122 | 3' | -57.1 | NC_004684.1 | + | 40706 | 0.75 | 0.224645 |
Target: 5'- aGCuGgGCGgcgGUGGCCG-GGACGACCa -3' miRNA: 3'- aCG-CgCGUag-CACCGGCaCCUGUUGG- -5' |
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19122 | 3' | -57.1 | NC_004684.1 | + | 29695 | 0.75 | 0.236365 |
Target: 5'- gUGCGCGCGUCaacGUCGUGGGCcagAACCu -3' miRNA: 3'- -ACGCGCGUAGcacCGGCACCUG---UUGG- -5' |
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19122 | 3' | -57.1 | NC_004684.1 | + | 48961 | 0.74 | 0.261341 |
Target: 5'- gGCGgGCGggGUGGCCG-GGGCGGgCg -3' miRNA: 3'- aCGCgCGUagCACCGGCaCCUGUUgG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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