miRNA display CGI


Results 1 - 20 of 159 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19122 3' -57.1 NC_004684.1 + 452 1.12 0.000536
Target:  5'- cUGCGCGCAUCGUGGCCGUGGACAACCg -3'
miRNA:   3'- -ACGCGCGUAGCACCGGCACCUGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 546 0.67 0.631234
Target:  5'- aGCGCG-GUCGaGGCCGccaccgaggaGGACAagGCCg -3'
miRNA:   3'- aCGCGCgUAGCaCCGGCa---------CCUGU--UGG- -5'
19122 3' -57.1 NC_004684.1 + 676 0.66 0.681345
Target:  5'- aGCGUGCGccugauccUCGgccccgaggucagccGCCgGUGGACGGCCu -3'
miRNA:   3'- aCGCGCGU--------AGCac-------------CGG-CACCUGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 1108 0.71 0.374054
Target:  5'- gGCaccCGCAaCGUGGCCGUccgcugGGACGACg -3'
miRNA:   3'- aCGc--GCGUaGCACCGGCA------CCUGUUGg -5'
19122 3' -57.1 NC_004684.1 + 1297 0.79 0.129059
Target:  5'- cGCGCGCGacgCGUGGCC--GGACAugCg -3'
miRNA:   3'- aCGCGCGUa--GCACCGGcaCCUGUugG- -5'
19122 3' -57.1 NC_004684.1 + 1767 0.69 0.515465
Target:  5'- aGCuGCGCG-CGUGGCUGgacgccaaccaGGACGccGCCg -3'
miRNA:   3'- aCG-CGCGUaGCACCGGCa----------CCUGU--UGG- -5'
19122 3' -57.1 NC_004684.1 + 2403 0.66 0.695076
Target:  5'- gGCGUGCAcgUCGUGGCacCGUuccagaccgGcGACAagGCCg -3'
miRNA:   3'- aCGCGCGU--AGCACCG--GCA---------C-CUGU--UGG- -5'
19122 3' -57.1 NC_004684.1 + 2875 0.66 0.673919
Target:  5'- cUGgGCGuCAUCG-GuGCCugGUGG-CAGCCg -3'
miRNA:   3'- -ACgCGC-GUAGCaC-CGG--CACCuGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 2956 0.68 0.536033
Target:  5'- gGCGCGCAcaucgagaccaUCG-GuGCCcUGGACGGCg -3'
miRNA:   3'- aCGCGCGU-----------AGCaC-CGGcACCUGUUGg -5'
19122 3' -57.1 NC_004684.1 + 3490 0.72 0.35727
Target:  5'- gGC-CGCAcCGUGGCCGccaGGAC-GCCg -3'
miRNA:   3'- aCGcGCGUaGCACCGGCa--CCUGuUGG- -5'
19122 3' -57.1 NC_004684.1 + 3541 0.71 0.374054
Target:  5'- cGCGCGCA-CGUGGCacc-GACAGCg -3'
miRNA:   3'- aCGCGCGUaGCACCGgcacCUGUUGg -5'
19122 3' -57.1 NC_004684.1 + 3813 0.67 0.599194
Target:  5'- cGcCGCGCcgCGcaGGCCGaUGGACcugauggcagcGGCCg -3'
miRNA:   3'- aC-GCGCGuaGCa-CCGGC-ACCUG-----------UUGG- -5'
19122 3' -57.1 NC_004684.1 + 3830 0.67 0.599195
Target:  5'- gGCGCGUucggCGU-GCCGaccGACGACCa -3'
miRNA:   3'- aCGCGCGua--GCAcCGGCac-CUGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 4142 0.67 0.588557
Target:  5'- --aGCGCAUCGgcgcGGacaCCGUGGACGcgaucaugGCCc -3'
miRNA:   3'- acgCGCGUAGCa---CC---GGCACCUGU--------UGG- -5'
19122 3' -57.1 NC_004684.1 + 4466 0.67 0.609859
Target:  5'- cGUGCGCG-CGaGGCCGUcGuuGGCCg -3'
miRNA:   3'- aCGCGCGUaGCaCCGGCAcCugUUGG- -5'
19122 3' -57.1 NC_004684.1 + 4702 0.71 0.409191
Target:  5'- cGCGCGCAUCauucUGGCC-UGcuACGGCCa -3'
miRNA:   3'- aCGCGCGUAGc---ACCGGcACc-UGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 4773 0.69 0.476336
Target:  5'- cGUGCGCGUCGccagcaagcgccucgGcGCgGUGGcCGACCg -3'
miRNA:   3'- aCGCGCGUAGCa--------------C-CGgCACCuGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 5329 0.68 0.556879
Target:  5'- cGUGCaGCAguggGUGGCgGUGGGCugacauGCCc -3'
miRNA:   3'- aCGCG-CGUag--CACCGgCACCUGu-----UGG- -5'
19122 3' -57.1 NC_004684.1 + 5616 0.68 0.536033
Target:  5'- gGCGCGCAUgGU-GCUGgagcUGGAC-GCCu -3'
miRNA:   3'- aCGCGCGUAgCAcCGGC----ACCUGuUGG- -5'
19122 3' -57.1 NC_004684.1 + 5721 0.66 0.705574
Target:  5'- cGCGcCGCAgaugcCGUucGCCauccacaaGUGGACGGCCa -3'
miRNA:   3'- aCGC-GCGUa----GCAc-CGG--------CACCUGUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.