miRNA display CGI


Results 41 - 60 of 159 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19122 3' -57.1 NC_004684.1 + 61031 0.67 0.631234
Target:  5'- cGCGCaggcCAUCGccGCCGacaUGGACAACg -3'
miRNA:   3'- aCGCGc---GUAGCacCGGC---ACCUGUUGg -5'
19122 3' -57.1 NC_004684.1 + 546 0.67 0.631234
Target:  5'- aGCGCG-GUCGaGGCCGccaccgaggaGGACAagGCCg -3'
miRNA:   3'- aCGCGCgUAGCaCCGGCa---------CCUGU--UGG- -5'
19122 3' -57.1 NC_004684.1 + 9564 0.67 0.628026
Target:  5'- gUGCGcCGCGaacaCGUGGCCGaccugauccguggcUgGGACAGCa -3'
miRNA:   3'- -ACGC-GCGUa---GCACCGGC--------------A-CCUGUUGg -5'
19122 3' -57.1 NC_004684.1 + 35883 0.67 0.624818
Target:  5'- cGCGCGgGcCGUGGUccccgacacugcauaCGUGGGCu-CCg -3'
miRNA:   3'- aCGCGCgUaGCACCG---------------GCACCUGuuGG- -5'
19122 3' -57.1 NC_004684.1 + 40098 0.67 0.620542
Target:  5'- aGCG-GCcgaucUCGUGGCCGUagcGGGCGcuggcgGCCu -3'
miRNA:   3'- aCGCgCGu----AGCACCGGCA---CCUGU------UGG- -5'
19122 3' -57.1 NC_004684.1 + 42522 0.67 0.620542
Target:  5'- gGCGCGC-UCaccGCCGUGGuCGGCg -3'
miRNA:   3'- aCGCGCGuAGcacCGGCACCuGUUGg -5'
19122 3' -57.1 NC_004684.1 + 63526 0.67 0.620542
Target:  5'- gGCGuCGCAgcUCGcGGgCGUGGcgcuCGGCCu -3'
miRNA:   3'- aCGC-GCGU--AGCaCCgGCACCu---GUUGG- -5'
19122 3' -57.1 NC_004684.1 + 65103 0.67 0.620542
Target:  5'- aGCacCGCGUCGUGGCCcaGGcugGCGGCa -3'
miRNA:   3'- aCGc-GCGUAGCACCGGcaCC---UGUUGg -5'
19122 3' -57.1 NC_004684.1 + 46605 0.67 0.620542
Target:  5'- uUGCGUGCcgguggcuUCGgGGCCaccgccuccgguGUGGACGGCa -3'
miRNA:   3'- -ACGCGCGu-------AGCaCCGG------------CACCUGUUGg -5'
19122 3' -57.1 NC_004684.1 + 18838 0.67 0.620542
Target:  5'- gGCGCGCAggccgaggUGUGGCaggagGUcGGCAACUa -3'
miRNA:   3'- aCGCGCGUa-------GCACCGg----CAcCUGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 6846 0.67 0.609859
Target:  5'- gGCGCGaagggCGacGCCGUGGugGugCu -3'
miRNA:   3'- aCGCGCgua--GCacCGGCACCugUugG- -5'
19122 3' -57.1 NC_004684.1 + 44477 0.67 0.609859
Target:  5'- cUGCGUGCG-CGUGGaccaCCG-GGACAGg- -3'
miRNA:   3'- -ACGCGCGUaGCACC----GGCaCCUGUUgg -5'
19122 3' -57.1 NC_004684.1 + 52735 0.67 0.609859
Target:  5'- gGCGCuGUccuccaggucGUCGUGGCCGcUGGcGCAGUCg -3'
miRNA:   3'- aCGCG-CG----------UAGCACCGGC-ACC-UGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 63177 0.67 0.609859
Target:  5'- gGCGCauGCAgUCGUGGCUGgcGGugAucagaACCa -3'
miRNA:   3'- aCGCG--CGU-AGCACCGGCa-CCugU-----UGG- -5'
19122 3' -57.1 NC_004684.1 + 66742 0.67 0.609859
Target:  5'- cGUGCGCGUCgGUGuccuuggggucGCCGUGcucguCGGCCa -3'
miRNA:   3'- aCGCGCGUAG-CAC-----------CGGCACcu---GUUGG- -5'
19122 3' -57.1 NC_004684.1 + 4466 0.67 0.609859
Target:  5'- cGUGCGCG-CGaGGCCGUcGuuGGCCg -3'
miRNA:   3'- aCGCGCGUaGCaCCGGCAcCugUUGG- -5'
19122 3' -57.1 NC_004684.1 + 59948 0.67 0.606658
Target:  5'- cGUGCGCGUUGUGcuggcggcgcucguGCCGcacccGGACcuuGCCg -3'
miRNA:   3'- aCGCGCGUAGCAC--------------CGGCa----CCUGu--UGG- -5'
19122 3' -57.1 NC_004684.1 + 3830 0.67 0.599195
Target:  5'- gGCGCGUucggCGU-GCCGaccGACGACCa -3'
miRNA:   3'- aCGCGCGua--GCAcCGGCac-CUGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 13671 0.67 0.599195
Target:  5'- gGCGCacgguccagGaCAUgGUGGCCGguucGGGCAcGCCg -3'
miRNA:   3'- aCGCG---------C-GUAgCACCGGCa---CCUGU-UGG- -5'
19122 3' -57.1 NC_004684.1 + 3813 0.67 0.599194
Target:  5'- cGcCGCGCcgCGcaGGCCGaUGGACcugauggcagcGGCCg -3'
miRNA:   3'- aC-GCGCGuaGCa-CCGGC-ACCUG-----------UUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.