Results 41 - 60 of 160 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
19122 | 5' | -56.2 | NC_004684.1 | + | 32053 | 0.67 | 0.672287 |
Target: 5'- cGA-GUCGGCGuugacGCACaCGGCGACG-CACc -3' miRNA: 3'- -CUcCAGCCGU-----CGUG-GCUGUUGCuGUG- -5' |
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19122 | 5' | -56.2 | NC_004684.1 | + | 48908 | 0.67 | 0.661506 |
Target: 5'- -cGGU-GGCGGUGCCGgACAcCGACAg -3' miRNA: 3'- cuCCAgCCGUCGUGGC-UGUuGCUGUg -5' |
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19122 | 5' | -56.2 | NC_004684.1 | + | 16341 | 0.67 | 0.661506 |
Target: 5'- cGAGGagCGGCuGGCGCUGGC--CGACAa -3' miRNA: 3'- -CUCCa-GCCG-UCGUGGCUGuuGCUGUg -5' |
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19122 | 5' | -56.2 | NC_004684.1 | + | 24809 | 0.67 | 0.661506 |
Target: 5'- -cGGUCGGCAaCAUCGcGCAG-GACACc -3' miRNA: 3'- cuCCAGCCGUcGUGGC-UGUUgCUGUG- -5' |
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19122 | 5' | -56.2 | NC_004684.1 | + | 36985 | 0.67 | 0.660427 |
Target: 5'- cAGGUguugccaCGGCAGCGCCGGgAugcGCGugGg -3' miRNA: 3'- cUCCA-------GCCGUCGUGGCUgU---UGCugUg -5' |
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19122 | 5' | -56.2 | NC_004684.1 | + | 42712 | 0.67 | 0.658266 |
Target: 5'- -uGGUCGGCAGgccuggaaccucacCGCCGuCGGCGAaguGCa -3' miRNA: 3'- cuCCAGCCGUC--------------GUGGCuGUUGCUg--UG- -5' |
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19122 | 5' | -56.2 | NC_004684.1 | + | 26863 | 0.67 | 0.650699 |
Target: 5'- gGAGGUCGcCAcCGCCGACAaccuggGCGuGCGCg -3' miRNA: 3'- -CUCCAGCcGUcGUGGCUGU------UGC-UGUG- -5' |
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19122 | 5' | -56.2 | NC_004684.1 | + | 65780 | 0.67 | 0.650699 |
Target: 5'- -cGGUgGGCGcGCGCaCGGCGAcCGAUGCc -3' miRNA: 3'- cuCCAgCCGU-CGUG-GCUGUU-GCUGUG- -5' |
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19122 | 5' | -56.2 | NC_004684.1 | + | 25003 | 0.67 | 0.650699 |
Target: 5'- uGGGGUCGGCGGgGCCGAUugucucUGcCAUc -3' miRNA: 3'- -CUCCAGCCGUCgUGGCUGuu----GCuGUG- -5' |
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19122 | 5' | -56.2 | NC_004684.1 | + | 27318 | 0.67 | 0.650699 |
Target: 5'- -cGGUgCGGcCAGCuuUGACGACGGCGg -3' miRNA: 3'- cuCCA-GCC-GUCGugGCUGUUGCUGUg -5' |
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19122 | 5' | -56.2 | NC_004684.1 | + | 1040 | 0.67 | 0.650699 |
Target: 5'- uGGGGccagaaaUGGCGGCACCGGuugugcuggcUGGCGGCGCu -3' miRNA: 3'- -CUCCa------GCCGUCGUGGCU----------GUUGCUGUG- -5' |
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19122 | 5' | -56.2 | NC_004684.1 | + | 34479 | 0.67 | 0.650699 |
Target: 5'- cAGGUC--CGGCACCGcCGAgGACACc -3' miRNA: 3'- cUCCAGccGUCGUGGCuGUUgCUGUG- -5' |
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19122 | 5' | -56.2 | NC_004684.1 | + | 10720 | 0.67 | 0.649617 |
Target: 5'- -cGGcagGGCAGCcagGCCGACGagaucgaGCGGCGCa -3' miRNA: 3'- cuCCag-CCGUCG---UGGCUGU-------UGCUGUG- -5' |
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19122 | 5' | -56.2 | NC_004684.1 | + | 3567 | 0.67 | 0.639875 |
Target: 5'- aAGGUCGuGguGCGCC-ACAGCGGgGa -3' miRNA: 3'- cUCCAGC-CguCGUGGcUGUUGCUgUg -5' |
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19122 | 5' | -56.2 | NC_004684.1 | + | 24106 | 0.67 | 0.639875 |
Target: 5'- aAGGUgCcGCAGC-CCGGCAcgcCGACGCa -3' miRNA: 3'- cUCCA-GcCGUCGuGGCUGUu--GCUGUG- -5' |
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19122 | 5' | -56.2 | NC_004684.1 | + | 7817 | 0.67 | 0.639875 |
Target: 5'- -uGGUgCGGCugauggacauGCGCuggugCGACAACGGCGCg -3' miRNA: 3'- cuCCA-GCCGu---------CGUG-----GCUGUUGCUGUG- -5' |
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19122 | 5' | -56.2 | NC_004684.1 | + | 19564 | 0.67 | 0.639875 |
Target: 5'- --cGUCaGGCGGguCCGACGAgcaGGCACg -3' miRNA: 3'- cucCAG-CCGUCguGGCUGUUg--CUGUG- -5' |
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19122 | 5' | -56.2 | NC_004684.1 | + | 59676 | 0.67 | 0.639875 |
Target: 5'- cAGGUggcucaCGGcCAGCGCC-ACGGCGACGg -3' miRNA: 3'- cUCCA------GCC-GUCGUGGcUGUUGCUGUg -5' |
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19122 | 5' | -56.2 | NC_004684.1 | + | 25192 | 0.67 | 0.633377 |
Target: 5'- -uGGUUGGCcaGGCGCUGGCAccggguggcuucacCGGCACg -3' miRNA: 3'- cuCCAGCCG--UCGUGGCUGUu-------------GCUGUG- -5' |
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19122 | 5' | -56.2 | NC_004684.1 | + | 13124 | 0.67 | 0.633377 |
Target: 5'- cGGGU-GGCGGCGCUGGCugaggagcuguccCGGCGCg -3' miRNA: 3'- cUCCAgCCGUCGUGGCUGuu-----------GCUGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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