miRNA display CGI


Results 21 - 40 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19122 5' -56.2 NC_004684.1 + 7662 0.7 0.491509
Target:  5'- cGGGUCGGCGGCcuaCGuCGugGAuCGCa -3'
miRNA:   3'- cUCCAGCCGUCGug-GCuGUugCU-GUG- -5'
19122 5' -56.2 NC_004684.1 + 7817 0.67 0.639875
Target:  5'- -uGGUgCGGCugauggacauGCGCuggugCGACAACGGCGCg -3'
miRNA:   3'- cuCCA-GCCGu---------CGUG-----GCUGUUGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 8114 0.69 0.553797
Target:  5'- ----cCGGCAGCAUUGACGAgGACGa -3'
miRNA:   3'- cuccaGCCGUCGUGGCUGUUgCUGUg -5'
19122 5' -56.2 NC_004684.1 + 8911 0.69 0.511945
Target:  5'- -uGGUCGGCcuGGCAgaUCGGCGACGAgGa -3'
miRNA:   3'- cuCCAGCCG--UCGU--GGCUGUUGCUgUg -5'
19122 5' -56.2 NC_004684.1 + 8956 0.66 0.693728
Target:  5'- cGGGUcCGGCacGGgGCCGgagGCAACGGCGg -3'
miRNA:   3'- cUCCA-GCCG--UCgUGGC---UGUUGCUGUg -5'
19122 5' -56.2 NC_004684.1 + 9368 0.68 0.607401
Target:  5'- cGAGGagcCGGa--CACCGAgGACGACGCc -3'
miRNA:   3'- -CUCCa--GCCgucGUGGCUgUUGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 9925 0.68 0.596605
Target:  5'- -cGGUgGGCAGgACCGGCAGuuugucgggaGACAUg -3'
miRNA:   3'- cuCCAgCCGUCgUGGCUGUUg---------CUGUG- -5'
19122 5' -56.2 NC_004684.1 + 10302 0.67 0.618217
Target:  5'- aGAGGUCGcCcGCACCGAUGugcGCGcCGCa -3'
miRNA:   3'- -CUCCAGCcGuCGUGGCUGU---UGCuGUG- -5'
19122 5' -56.2 NC_004684.1 + 10720 0.67 0.649617
Target:  5'- -cGGcagGGCAGCcagGCCGACGagaucgaGCGGCGCa -3'
miRNA:   3'- cuCCag-CCGUCG---UGGCUGU-------UGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 11861 0.7 0.451831
Target:  5'- cGGGUacgaacucgUGGCGGCGCUGGCggUGaACACa -3'
miRNA:   3'- cUCCA---------GCCGUCGUGGCUGuuGC-UGUG- -5'
19122 5' -56.2 NC_004684.1 + 11950 0.67 0.629045
Target:  5'- -uGGUCGcCAGC-CUGGCAccuGCGGCGCc -3'
miRNA:   3'- cuCCAGCcGUCGuGGCUGU---UGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 11985 0.69 0.511945
Target:  5'- ----cCGGCGGCACCGACGGCauGACcccGCa -3'
miRNA:   3'- cuccaGCCGUCGUGGCUGUUG--CUG---UG- -5'
19122 5' -56.2 NC_004684.1 + 12791 0.69 0.532724
Target:  5'- cGAGGacaaCGGCAccccCGCCGACGACG-CGCc -3'
miRNA:   3'- -CUCCa---GCCGUc---GUGGCUGUUGCuGUG- -5'
19122 5' -56.2 NC_004684.1 + 12824 0.76 0.21442
Target:  5'- cGAGGaCGGCGGCucugcuGCCGACGugGuCGCg -3'
miRNA:   3'- -CUCCaGCCGUCG------UGGCUGUugCuGUG- -5'
19122 5' -56.2 NC_004684.1 + 13124 0.67 0.633377
Target:  5'- cGGGU-GGCGGCGCUGGCugaggagcuguccCGGCGCg -3'
miRNA:   3'- cUCCAgCCGUCGUGGCUGuu-----------GCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 14320 0.67 0.672287
Target:  5'- aAGGUCGGUGGCaagaccaccGCUGACAucGCGuACAa -3'
miRNA:   3'- cUCCAGCCGUCG---------UGGCUGU--UGC-UGUg -5'
19122 5' -56.2 NC_004684.1 + 15684 0.73 0.305416
Target:  5'- -uGGccagCGGCGGCACCGACGccacCGGCAUc -3'
miRNA:   3'- cuCCa---GCCGUCGUGGCUGUu---GCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 15685 0.66 0.683031
Target:  5'- -uGGaaGGCGGCACCGGUAAaggucCGGCGCu -3'
miRNA:   3'- cuCCagCCGUCGUGGCUGUU-----GCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 15754 0.7 0.481433
Target:  5'- -cGGcCaGCAGCugCG-CAGCGGCACc -3'
miRNA:   3'- cuCCaGcCGUCGugGCuGUUGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 15784 0.74 0.298033
Target:  5'- -cGG-CGGCGaCACCGGCAACGuGCACa -3'
miRNA:   3'- cuCCaGCCGUcGUGGCUGUUGC-UGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.