miRNA display CGI


Results 1 - 20 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19122 5' -56.2 NC_004684.1 + 486 1.1 0.000822
Target:  5'- cGAGGUCGGCAGCACCGACAACGACACg -3'
miRNA:   3'- -CUCCAGCCGUCGUGGCUGUUGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 1040 0.67 0.650699
Target:  5'- uGGGGccagaaaUGGCGGCACCGGuugugcuggcUGGCGGCGCu -3'
miRNA:   3'- -CUCCa------GCCGUCGUGGCU----------GUUGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 1487 0.66 0.696926
Target:  5'- -cGGUgCGGCGGCccugguggccaaccuGCgcgccgcgcucaaCGGCGACGACGCg -3'
miRNA:   3'- cuCCA-GCCGUCG---------------UG-------------GCUGUUGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 2504 0.66 0.724385
Target:  5'- uGAGGgCGGCcucaacgacgcccGGCACUgcgGACGcuGCGGCACc -3'
miRNA:   3'- -CUCCaGCCG-------------UCGUGG---CUGU--UGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 2929 0.68 0.575111
Target:  5'- cGAGGUgccucCGGUgccgAGCACCGAggcCAuCGGCGCg -3'
miRNA:   3'- -CUCCA-----GCCG----UCGUGGCU---GUuGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 3189 0.66 0.723339
Target:  5'- cAGGUgucgaucCGGCA-CACCGGCAACGccgacguGCGCc -3'
miRNA:   3'- cUCCA-------GCCGUcGUGGCUGUUGC-------UGUG- -5'
19122 5' -56.2 NC_004684.1 + 3531 0.68 0.607401
Target:  5'- aAGGcCGccacgcgcgcacGUGGCACCGACAGCGuGCGCc -3'
miRNA:   3'- cUCCaGC------------CGUCGUGGCUGUUGC-UGUG- -5'
19122 5' -56.2 NC_004684.1 + 3567 0.67 0.639875
Target:  5'- aAGGUCGuGguGCGCC-ACAGCGGgGa -3'
miRNA:   3'- cUCCAGC-CguCGUGGcUGUUGCUgUg -5'
19122 5' -56.2 NC_004684.1 + 3828 0.66 0.735832
Target:  5'- uGGGcgcguUCGGC-GUGCCGAcCGACGACcACa -3'
miRNA:   3'- cUCC-----AGCCGuCGUGGCU-GUUGCUG-UG- -5'
19122 5' -56.2 NC_004684.1 + 3995 0.66 0.704367
Target:  5'- -cGGUCGGgAGUACCG-CuACGcCGCc -3'
miRNA:   3'- cuCCAGCCgUCGUGGCuGuUGCuGUG- -5'
19122 5' -56.2 NC_004684.1 + 4469 0.66 0.696926
Target:  5'- -uGGUCGGCuucgucaccggccagGGCcuggcccGCCGugGCAACGGCAUg -3'
miRNA:   3'- cuCCAGCCG---------------UCG-------UGGC--UGUUGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 5691 0.66 0.72543
Target:  5'- cGGGGccCGGCcugcccacGGCACCGACGccaAUGGCGu -3'
miRNA:   3'- -CUCCa-GCCG--------UCGUGGCUGU---UGCUGUg -5'
19122 5' -56.2 NC_004684.1 + 5872 0.73 0.31218
Target:  5'- cAGGcCgGGCAGCACCagccugaccggguGGCGGCGGCGCu -3'
miRNA:   3'- cUCCaG-CCGUCGUGG-------------CUGUUGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 5932 0.74 0.276716
Target:  5'- uAGGU-GGCacgcgAGCACCGGCGGCGAgACa -3'
miRNA:   3'- cUCCAgCCG-----UCGUGGCUGUUGCUgUG- -5'
19122 5' -56.2 NC_004684.1 + 6076 0.77 0.193073
Target:  5'- cGAGGgCGGCGGC-CCGGCGGCGGUGCu -3'
miRNA:   3'- -CUCCaGCCGUCGuGGCUGUUGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 6410 0.69 0.511945
Target:  5'- cGAGGuguacagcUCGGCGGCGgCGugAACGccuuCGCg -3'
miRNA:   3'- -CUCC--------AGCCGUCGUgGCugUUGCu---GUG- -5'
19122 5' -56.2 NC_004684.1 + 6710 0.66 0.683031
Target:  5'- --cGUCGGCgcgAGCaaGCCGAagaaaGGCGACACc -3'
miRNA:   3'- cucCAGCCG---UCG--UGGCUg----UUGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 6849 0.67 0.672287
Target:  5'- aGGGuGUCGaCGGCACCGGgcGCGGCGa -3'
miRNA:   3'- -CUC-CAGCcGUCGUGGCUguUGCUGUg -5'
19122 5' -56.2 NC_004684.1 + 6890 0.66 0.713885
Target:  5'- cGAGGUCGucaaccuGguGCGCCuGC-GCGACAUc -3'
miRNA:   3'- -CUCCAGC-------CguCGUGGcUGuUGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 7430 0.7 0.471459
Target:  5'- cGGGUgCGGCacgAGCGCCGccagcACAACGcGCACg -3'
miRNA:   3'- cUCCA-GCCG---UCGUGGC-----UGUUGC-UGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.