miRNA display CGI


Results 1 - 20 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19122 5' -56.2 NC_004684.1 + 22300 0.66 0.714938
Target:  5'- -cGG-CGGCGGUGCCGAacccCGAUGCu -3'
miRNA:   3'- cuCCaGCCGUCGUGGCUguu-GCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 59463 0.66 0.732722
Target:  5'- -cGGUCGGCGGCgauguccaccaccuGCgCGGcCAGCGGCc- -3'
miRNA:   3'- cuCCAGCCGUCG--------------UG-GCU-GUUGCUGug -5'
19122 5' -56.2 NC_004684.1 + 15685 0.66 0.683031
Target:  5'- -uGGaaGGCGGCACCGGUAAaggucCGGCGCu -3'
miRNA:   3'- cuCCagCCGUCGUGGCUGUU-----GCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 42538 0.66 0.683031
Target:  5'- -uGGUCGGC-GUGCUGACGGCGuuCGg -3'
miRNA:   3'- cuCCAGCCGuCGUGGCUGUUGCu-GUg -5'
19122 5' -56.2 NC_004684.1 + 44913 0.66 0.714938
Target:  5'- uGGcGUCGGUGcGCGCCGGguagucggUGGCGACGCu -3'
miRNA:   3'- cUC-CAGCCGU-CGUGGCU--------GUUGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 18418 0.66 0.683031
Target:  5'- -cGGccCGGCGggcGCACCGGCGGcCGACGu -3'
miRNA:   3'- cuCCa-GCCGU---CGUGGCUGUU-GCUGUg -5'
19122 5' -56.2 NC_004684.1 + 62944 0.66 0.714938
Target:  5'- cAGcGcgCGGCGcGCGCCGACgAugGugGCg -3'
miRNA:   3'- cUC-Ca-GCCGU-CGUGGCUG-UugCugUG- -5'
19122 5' -56.2 NC_004684.1 + 3828 0.66 0.735832
Target:  5'- uGGGcgcguUCGGC-GUGCCGAcCGACGACcACa -3'
miRNA:   3'- cUCC-----AGCCGuCGUGGCU-GUUGCUG-UG- -5'
19122 5' -56.2 NC_004684.1 + 6710 0.66 0.683031
Target:  5'- --cGUCGGCgcgAGCaaGCCGAagaaaGGCGACACc -3'
miRNA:   3'- cucCAGCCG---UCG--UGGCUg----UUGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 50270 0.66 0.683031
Target:  5'- uGGGGUCgucgcuGGcCAGCGCCaggcccGACGGCGACu- -3'
miRNA:   3'- -CUCCAG------CC-GUCGUGG------CUGUUGCUGug -5'
19122 5' -56.2 NC_004684.1 + 20977 0.66 0.72543
Target:  5'- -cGGagCGGCGGCGcaggucggcCCGAUccuGCGGCGCa -3'
miRNA:   3'- cuCCa-GCCGUCGU---------GGCUGu--UGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 53775 0.66 0.693728
Target:  5'- -uGGUCGGguccCAG-ACCGGC-GCGGCGCu -3'
miRNA:   3'- cuCCAGCC----GUCgUGGCUGuUGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 55198 0.66 0.693728
Target:  5'- -uGG-CGGCGGCGCUGGaugccuACGAgGCg -3'
miRNA:   3'- cuCCaGCCGUCGUGGCUgu----UGCUgUG- -5'
19122 5' -56.2 NC_004684.1 + 2504 0.66 0.724385
Target:  5'- uGAGGgCGGCcucaacgacgcccGGCACUgcgGACGcuGCGGCACc -3'
miRNA:   3'- -CUCCaGCCG-------------UCGUGG---CUGU--UGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 57251 0.66 0.704367
Target:  5'- uGGG-CgGGCGGCACCGuCGGCccGCACa -3'
miRNA:   3'- cUCCaG-CCGUCGUGGCuGUUGc-UGUG- -5'
19122 5' -56.2 NC_004684.1 + 35081 0.66 0.683031
Target:  5'- --cGUUGGUGuGCACCGGCGucaGGCACa -3'
miRNA:   3'- cucCAGCCGU-CGUGGCUGUug-CUGUG- -5'
19122 5' -56.2 NC_004684.1 + 63564 0.66 0.735832
Target:  5'- -cGGUCGGCA-CGCCGA--ACG-CGCc -3'
miRNA:   3'- cuCCAGCCGUcGUGGCUguUGCuGUG- -5'
19122 5' -56.2 NC_004684.1 + 6890 0.66 0.713885
Target:  5'- cGAGGUCGucaaccuGguGCGCCuGC-GCGACAUc -3'
miRNA:   3'- -CUCCAGC-------CguCGUGGcUGuUGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 66288 0.66 0.735832
Target:  5'- -cGGccacguugCGGguGC-CCGACGgcaGCGGCGCg -3'
miRNA:   3'- cuCCa-------GCCguCGuGGCUGU---UGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 65819 0.66 0.683031
Target:  5'- cAGGUgaccCGGaGGCACCGGCGGCu-CACa -3'
miRNA:   3'- cUCCA----GCCgUCGUGGCUGUUGcuGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.