miRNA display CGI


Results 1 - 20 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19122 5' -56.2 NC_004684.1 + 26611 0.7 0.451831
Target:  5'- -cGG-CGGCGGCgucAUCGcCAACGACACc -3'
miRNA:   3'- cuCCaGCCGUCG---UGGCuGUUGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 49180 0.72 0.344424
Target:  5'- ---cUCGGCGGCGgCGGCGGCGGCGg -3'
miRNA:   3'- cuccAGCCGUCGUgGCUGUUGCUGUg -5'
19122 5' -56.2 NC_004684.1 + 22348 0.72 0.361
Target:  5'- cAGG-CGGUGGCGgCGGCGGCGGCGg -3'
miRNA:   3'- cUCCaGCCGUCGUgGCUGUUGCUGUg -5'
19122 5' -56.2 NC_004684.1 + 33830 0.72 0.378124
Target:  5'- -cGGUgugccCGGCGGCGgCGGCAACGGgGCc -3'
miRNA:   3'- cuCCA-----GCCGUCGUgGCUGUUGCUgUG- -5'
19122 5' -56.2 NC_004684.1 + 49236 0.71 0.395785
Target:  5'- cGGGcGUCGGCAcGuCGCCccACAGCGGCGCg -3'
miRNA:   3'- -CUC-CAGCCGU-C-GUGGc-UGUUGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 16014 0.71 0.40846
Target:  5'- cGGGGaCGGUGGCGuggucguugacgugcCCGGCGACGACGa -3'
miRNA:   3'- -CUCCaGCCGUCGU---------------GGCUGUUGCUGUg -5'
19122 5' -56.2 NC_004684.1 + 59872 0.71 0.423252
Target:  5'- cAGGUCGGUccgGGCAgguccaccCCGauGCGGCGGCGCa -3'
miRNA:   3'- cUCCAGCCG---UCGU--------GGC--UGUUGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 54224 0.71 0.427
Target:  5'- cGAGGUCGGCcagcagcuguuccagGGCACCG-CGcCGGgACa -3'
miRNA:   3'- -CUCCAGCCG---------------UCGUGGCuGUuGCUgUG- -5'
19122 5' -56.2 NC_004684.1 + 11861 0.7 0.451831
Target:  5'- cGGGUacgaacucgUGGCGGCGCUGGCggUGaACACa -3'
miRNA:   3'- cUCCA---------GCCGUCGUGGCUGuuGC-UGUG- -5'
19122 5' -56.2 NC_004684.1 + 61563 0.72 0.344424
Target:  5'- cGGGUgCGGCAGCACuCGcGCAGCuggGACGCc -3'
miRNA:   3'- cUCCA-GCCGUCGUG-GC-UGUUG---CUGUG- -5'
19122 5' -56.2 NC_004684.1 + 36791 0.72 0.344424
Target:  5'- -uGGUCGGCGGCGgcUCGGuCAgcuACGACACc -3'
miRNA:   3'- cuCCAGCCGUCGU--GGCU-GU---UGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 32658 0.73 0.336344
Target:  5'- -cGGUUGGCaaGGC-CUGGCGGCGGCAUg -3'
miRNA:   3'- cuCCAGCCG--UCGuGGCUGUUGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 12824 0.76 0.21442
Target:  5'- cGAGGaCGGCGGCucugcuGCCGACGugGuCGCg -3'
miRNA:   3'- -CUCCaGCCGUCG------UGGCUGUugCuGUG- -5'
19122 5' -56.2 NC_004684.1 + 50608 0.75 0.25021
Target:  5'- -cGGUCGGCGGguCAUCGGCGuggcCGACACa -3'
miRNA:   3'- cuCCAGCCGUC--GUGGCUGUu---GCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 62601 0.74 0.276716
Target:  5'- -cGGUCGGCcaccGCGCCGAgGcgcuugcugGCGACGCg -3'
miRNA:   3'- cuCCAGCCGu---CGUGGCUgU---------UGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 32218 0.74 0.276716
Target:  5'- cGGGaGcCGGUucGGUAUCGACAGCGGCGCg -3'
miRNA:   3'- -CUC-CaGCCG--UCGUGGCUGUUGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 15784 0.74 0.298033
Target:  5'- -cGG-CGGCGaCACCGGCAACGuGCACa -3'
miRNA:   3'- cuCCaGCCGUcGUGGCUGUUGC-UGUG- -5'
19122 5' -56.2 NC_004684.1 + 30318 0.74 0.298033
Target:  5'- cGAGGUCGG-GGCACCGGCcACGuCGu -3'
miRNA:   3'- -CUCCAGCCgUCGUGGCUGuUGCuGUg -5'
19122 5' -56.2 NC_004684.1 + 15684 0.73 0.305416
Target:  5'- -uGGccagCGGCGGCACCGACGccacCGGCAUc -3'
miRNA:   3'- cuCCa---GCCGUCGUGGCUGUu---GCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 5872 0.73 0.31218
Target:  5'- cAGGcCgGGCAGCACCagccugaccggguGGCGGCGGCGCu -3'
miRNA:   3'- cUCCaG-CCGUCGUGG-------------CUGUUGCUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.