miRNA display CGI


Results 1 - 20 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19122 5' -56.2 NC_004684.1 + 486 1.1 0.000822
Target:  5'- cGAGGUCGGCAGCACCGACAACGACACg -3'
miRNA:   3'- -CUCCAGCCGUCGUGGCUGUUGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 36104 0.78 0.155916
Target:  5'- cGAGGUaCGGCGGUAgCCGcCGACGAUGCg -3'
miRNA:   3'- -CUCCA-GCCGUCGU-GGCuGUUGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 6076 0.77 0.193073
Target:  5'- cGAGGgCGGCGGC-CCGGCGGCGGUGCu -3'
miRNA:   3'- -CUCCaGCCGUCGuGGCUGUUGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 12824 0.76 0.21442
Target:  5'- cGAGGaCGGCGGCucugcuGCCGACGugGuCGCg -3'
miRNA:   3'- -CUCCaGCCGUCG------UGGCUGUugCuGUG- -5'
19122 5' -56.2 NC_004684.1 + 24759 0.75 0.225835
Target:  5'- -uGG-CGGCaccAGCACCGGCGGCGGCGg -3'
miRNA:   3'- cuCCaGCCG---UCGUGGCUGUUGCUGUg -5'
19122 5' -56.2 NC_004684.1 + 57391 0.75 0.231734
Target:  5'- cAGGUcCGGCAGUuCCGGCAACGGgAUg -3'
miRNA:   3'- cUCCA-GCCGUCGuGGCUGUUGCUgUG- -5'
19122 5' -56.2 NC_004684.1 + 45380 0.75 0.23594
Target:  5'- cAGGUCGGCgAGCACCGGCcccauggccuccugGACcGCGCg -3'
miRNA:   3'- cUCCAGCCG-UCGUGGCUG--------------UUGcUGUG- -5'
19122 5' -56.2 NC_004684.1 + 50608 0.75 0.25021
Target:  5'- -cGGUCGGCGGguCAUCGGCGuggcCGACACa -3'
miRNA:   3'- cuCCAGCCGUC--GUGGCUGUu---GCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 62601 0.74 0.276716
Target:  5'- -cGGUCGGCcaccGCGCCGAgGcgcuugcugGCGACGCg -3'
miRNA:   3'- cuCCAGCCGu---CGUGGCUgU---------UGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 32218 0.74 0.276716
Target:  5'- cGGGaGcCGGUucGGUAUCGACAGCGGCGCg -3'
miRNA:   3'- -CUC-CaGCCG--UCGUGGCUGUUGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 5932 0.74 0.276716
Target:  5'- uAGGU-GGCacgcgAGCACCGGCGGCGAgACa -3'
miRNA:   3'- cUCCAgCCG-----UCGUGGCUGUUGCUgUG- -5'
19122 5' -56.2 NC_004684.1 + 18314 0.74 0.276716
Target:  5'- -cGGUUGGCGGCGaCGugGGCGACGa -3'
miRNA:   3'- cuCCAGCCGUCGUgGCugUUGCUGUg -5'
19122 5' -56.2 NC_004684.1 + 30318 0.74 0.298033
Target:  5'- cGAGGUCGG-GGCACCGGCcACGuCGu -3'
miRNA:   3'- -CUCCAGCCgUCGUGGCUGuUGCuGUg -5'
19122 5' -56.2 NC_004684.1 + 15784 0.74 0.298033
Target:  5'- -cGG-CGGCGaCACCGGCAACGuGCACa -3'
miRNA:   3'- cuCCaGCCGUcGUGGCUGUUGC-UGUG- -5'
19122 5' -56.2 NC_004684.1 + 53659 0.73 0.305416
Target:  5'- cGAGGU-GGUGGCACCGAC--CGACAg -3'
miRNA:   3'- -CUCCAgCCGUCGUGGCUGuuGCUGUg -5'
19122 5' -56.2 NC_004684.1 + 15684 0.73 0.305416
Target:  5'- -uGGccagCGGCGGCACCGACGccacCGGCAUc -3'
miRNA:   3'- cuCCa---GCCGUCGUGGCUGUu---GCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 5872 0.73 0.31218
Target:  5'- cAGGcCgGGCAGCACCagccugaccggguGGCGGCGGCGCu -3'
miRNA:   3'- cUCCaG-CCGUCGUGG-------------CUGUUGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 32658 0.73 0.336344
Target:  5'- -cGGUUGGCaaGGC-CUGGCGGCGGCAUg -3'
miRNA:   3'- cuCCAGCCG--UCGuGGCUGUUGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 36791 0.72 0.344424
Target:  5'- -uGGUCGGCGGCGgcUCGGuCAgcuACGACACc -3'
miRNA:   3'- cuCCAGCCGUCGU--GGCU-GU---UGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 61563 0.72 0.344424
Target:  5'- cGGGUgCGGCAGCACuCGcGCAGCuggGACGCc -3'
miRNA:   3'- cUCCA-GCCGUCGUG-GC-UGUUG---CUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.