miRNA display CGI


Results 41 - 60 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19126 5' -60.8 NC_004684.1 + 33226 0.68 0.401772
Target:  5'- aGCUcGGGCGUGc-CGGUgagcagcaccGUGCCGcCCg -3'
miRNA:   3'- aCGA-CCCGCGCaaGCCG----------CACGGCuGG- -5'
19126 5' -60.8 NC_004684.1 + 7585 0.68 0.401772
Target:  5'- gGCUGGuGCGCGgcaaccCGGUG-GUCGugUa -3'
miRNA:   3'- aCGACC-CGCGCaa----GCCGCaCGGCugG- -5'
19126 5' -60.8 NC_004684.1 + 41771 0.68 0.393123
Target:  5'- aGCcagUGGGCGUacGgacgCGGCcagGUGCCGACg -3'
miRNA:   3'- aCG---ACCCGCG--Caa--GCCG---CACGGCUGg -5'
19126 5' -60.8 NC_004684.1 + 58757 0.68 0.393123
Target:  5'- gGCggGGGUGCcgaggaUCGGCGgUGCCGgugcACCg -3'
miRNA:   3'- aCGa-CCCGCGca----AGCCGC-ACGGC----UGG- -5'
19126 5' -60.8 NC_004684.1 + 40341 0.68 0.393123
Target:  5'- cGCUGGGCaggucGCuggCGGCG-GCCuuGGCCu -3'
miRNA:   3'- aCGACCCG-----CGcaaGCCGCaCGG--CUGG- -5'
19126 5' -60.8 NC_004684.1 + 5791 0.68 0.393123
Target:  5'- cUGCgccaGGcGUGCGaggUCGGgaCGUGCCGcACCg -3'
miRNA:   3'- -ACGa---CC-CGCGCa--AGCC--GCACGGC-UGG- -5'
19126 5' -60.8 NC_004684.1 + 38796 0.68 0.391408
Target:  5'- aGCUGGGCauuuccagCGGCGgUGCCcGCCu -3'
miRNA:   3'- aCGACCCGcgcaa---GCCGC-ACGGcUGG- -5'
19126 5' -60.8 NC_004684.1 + 45304 0.68 0.384597
Target:  5'- cGCUGucguuggcGGCGCGUgCGGUGUcCCGguaGCCa -3'
miRNA:   3'- aCGAC--------CCGCGCAaGCCGCAcGGC---UGG- -5'
19126 5' -60.8 NC_004684.1 + 17644 0.68 0.376193
Target:  5'- cGCUGGuGCGCuccGUgcCGaGCGUGCCGcugaguuugaacGCCg -3'
miRNA:   3'- aCGACC-CGCG---CAa-GC-CGCACGGC------------UGG- -5'
19126 5' -60.8 NC_004684.1 + 20227 0.68 0.376193
Target:  5'- cGcCUGGGUGCGccUGGCGcGCCGGu- -3'
miRNA:   3'- aC-GACCCGCGCaaGCCGCaCGGCUgg -5'
19126 5' -60.8 NC_004684.1 + 40706 0.68 0.376193
Target:  5'- aGCUGGGCGg---CGGUG-GCCgggacGACCa -3'
miRNA:   3'- aCGACCCGCgcaaGCCGCaCGG-----CUGG- -5'
19126 5' -60.8 NC_004684.1 + 49060 0.68 0.376193
Target:  5'- gGCUccGGGgGCGgcacCGGCGUGCgGAa- -3'
miRNA:   3'- aCGA--CCCgCGCaa--GCCGCACGgCUgg -5'
19126 5' -60.8 NC_004684.1 + 46117 0.68 0.367914
Target:  5'- gGCcGGGCGCGcgugcCGGgGUgGuuGACCu -3'
miRNA:   3'- aCGaCCCGCGCaa---GCCgCA-CggCUGG- -5'
19126 5' -60.8 NC_004684.1 + 9198 0.68 0.367914
Target:  5'- gGUUGGGCGCaGUggGcGCGUGaCCGgguggGCCa -3'
miRNA:   3'- aCGACCCGCG-CAagC-CGCAC-GGC-----UGG- -5'
19126 5' -60.8 NC_004684.1 + 7916 0.68 0.359761
Target:  5'- cGCUGGcCGCGcaggUGGUGgacaucgccGCCGACCg -3'
miRNA:   3'- aCGACCcGCGCaa--GCCGCa--------CGGCUGG- -5'
19126 5' -60.8 NC_004684.1 + 7221 0.68 0.359761
Target:  5'- cGCgucugGGaGCGCGUggaGGUGUGCCcgGugCa -3'
miRNA:   3'- aCGa----CC-CGCGCAag-CCGCACGG--CugG- -5'
19126 5' -60.8 NC_004684.1 + 15584 0.69 0.343838
Target:  5'- cGCgagaaggGGGCGCGcUCGGUGcGCU-ACCg -3'
miRNA:   3'- aCGa------CCCGCGCaAGCCGCaCGGcUGG- -5'
19126 5' -60.8 NC_004684.1 + 26696 0.69 0.341493
Target:  5'- cUGCUGGuGCGCGUgcugcucaaggugcUCGGCGUcgaaaucgagGCCcgcGACa -3'
miRNA:   3'- -ACGACC-CGCGCA--------------AGCCGCA----------CGG---CUGg -5'
19126 5' -60.8 NC_004684.1 + 2873 0.69 0.336068
Target:  5'- cGCUGGGCGUcaUCGGUGccugguggcaGCCGuuCCa -3'
miRNA:   3'- aCGACCCGCGcaAGCCGCa---------CGGCu-GG- -5'
19126 5' -60.8 NC_004684.1 + 23975 0.69 0.336068
Target:  5'- cGCcGGGCcucGgGUUCGGCGgcGgCGACCc -3'
miRNA:   3'- aCGaCCCG---CgCAAGCCGCa-CgGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.