miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19151 5' -51.7 NC_004684.1 + 15461 1.1 0.003076
Target:  5'- gGUAUCGCCGUCGAACUCGACAACGGGu -3'
miRNA:   3'- -CAUAGCGGCAGCUUGAGCUGUUGCCC- -5'
19151 5' -51.7 NC_004684.1 + 17163 0.81 0.258651
Target:  5'- -cGUCGCCGUCGAGCUgGuACAGCcuuGGGu -3'
miRNA:   3'- caUAGCGGCAGCUUGAgC-UGUUG---CCC- -5'
19151 5' -51.7 NC_004684.1 + 61249 0.79 0.300716
Target:  5'- ---cCGCCGUCGAACUgcucaaCGACGACGaGGa -3'
miRNA:   3'- cauaGCGGCAGCUUGA------GCUGUUGC-CC- -5'
19151 5' -51.7 NC_004684.1 + 6139 0.79 0.315866
Target:  5'- -cGUCGUCGUUGAGCaguUCGACGGCGGcGg -3'
miRNA:   3'- caUAGCGGCAGCUUG---AGCUGUUGCC-C- -5'
19151 5' -51.7 NC_004684.1 + 29325 0.78 0.339658
Target:  5'- -cGUCGCCGUUGAGCUucuUGGCcuCGGGg -3'
miRNA:   3'- caUAGCGGCAGCUUGA---GCUGuuGCCC- -5'
19151 5' -51.7 NC_004684.1 + 59638 0.76 0.427992
Target:  5'- cUGUCGUCGUCGGA--CGACAGCGGc -3'
miRNA:   3'- cAUAGCGGCAGCUUgaGCUGUUGCCc -5'
19151 5' -51.7 NC_004684.1 + 36140 0.76 0.447226
Target:  5'- gGUGUCccggagGCCGUCGAACacaUCGGCAAUGGc -3'
miRNA:   3'- -CAUAG------CGGCAGCUUG---AGCUGUUGCCc -5'
19151 5' -51.7 NC_004684.1 + 23973 0.76 0.457023
Target:  5'- --cUCGCCGggccUCGggUUCGGCGGCGGc -3'
miRNA:   3'- cauAGCGGC----AGCuuGAGCUGUUGCCc -5'
19151 5' -51.7 NC_004684.1 + 47615 0.74 0.539101
Target:  5'- ---cCGCCGUCGGuACUCGGCGuCGGc -3'
miRNA:   3'- cauaGCGGCAGCU-UGAGCUGUuGCCc -5'
19151 5' -51.7 NC_004684.1 + 58109 0.74 0.560451
Target:  5'- -cGUCGgCGUCGGgaACUCGACAucggccagcuCGGGg -3'
miRNA:   3'- caUAGCgGCAGCU--UGAGCUGUu---------GCCC- -5'
19151 5' -51.7 NC_004684.1 + 20813 0.74 0.582029
Target:  5'- ---cCGCCGUCGAGCgCGAC--UGGGa -3'
miRNA:   3'- cauaGCGGCAGCUUGaGCUGuuGCCC- -5'
19151 5' -51.7 NC_004684.1 + 65878 0.72 0.65838
Target:  5'- -cGUCGCCGUUGAGCgCGGCGcGCaGGu -3'
miRNA:   3'- caUAGCGGCAGCUUGaGCUGU-UGcCC- -5'
19151 5' -51.7 NC_004684.1 + 22439 0.72 0.680125
Target:  5'- -cAUCGCCGUCGGcg-CGGCGGCGa- -3'
miRNA:   3'- caUAGCGGCAGCUugaGCUGUUGCcc -5'
19151 5' -51.7 NC_004684.1 + 17106 0.71 0.701689
Target:  5'- -aGUCGCCGUCGGGCcUGGCGcUGGc -3'
miRNA:   3'- caUAGCGGCAGCUUGaGCUGUuGCCc -5'
19151 5' -51.7 NC_004684.1 + 51894 0.71 0.722987
Target:  5'- --cUCGUgGUggcacCGAACUCGGCgAACGGGu -3'
miRNA:   3'- cauAGCGgCA-----GCUUGAGCUG-UUGCCC- -5'
19151 5' -51.7 NC_004684.1 + 50593 0.71 0.733508
Target:  5'- ---aUGCCGUCGGG-UCGGCGgucgGCGGGu -3'
miRNA:   3'- cauaGCGGCAGCUUgAGCUGU----UGCCC- -5'
19151 5' -51.7 NC_004684.1 + 6785 0.7 0.784381
Target:  5'- -cAUCGCCGgUGcACUgGACGACGGc -3'
miRNA:   3'- caUAGCGGCaGCuUGAgCUGUUGCCc -5'
19151 5' -51.7 NC_004684.1 + 33815 0.7 0.797986
Target:  5'- --uUCGgCGUCGGcgggcggugugcccgGCggcggCGGCAACGGGg -3'
miRNA:   3'- cauAGCgGCAGCU---------------UGa----GCUGUUGCCC- -5'
19151 5' -51.7 NC_004684.1 + 39412 0.69 0.813123
Target:  5'- ---aCGCCGcCGAACUCcGCAcucuCGGGc -3'
miRNA:   3'- cauaGCGGCaGCUUGAGcUGUu---GCCC- -5'
19151 5' -51.7 NC_004684.1 + 39717 0.69 0.813123
Target:  5'- --cUCGCUGUCGAACUUGucCAccaGGGu -3'
miRNA:   3'- cauAGCGGCAGCUUGAGCu-GUug-CCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.