miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19151 5' -51.7 NC_004684.1 + 10 0.67 0.921344
Target:  5'- --uUCGUCGUgGAGC-CGgACAcCGGGg -3'
miRNA:   3'- cauAGCGGCAgCUUGaGC-UGUuGCCC- -5'
19151 5' -51.7 NC_004684.1 + 2580 0.68 0.880858
Target:  5'- -cAUgGCCcaCGAACUCGACAGCa-- -3'
miRNA:   3'- caUAgCGGcaGCUUGAGCUGUUGccc -5'
19151 5' -51.7 NC_004684.1 + 4302 0.66 0.947659
Target:  5'- -gGUCGCCGUaauguaGuGCUUGcACGGCGGc -3'
miRNA:   3'- caUAGCGGCAg-----CuUGAGC-UGUUGCCc -5'
19151 5' -51.7 NC_004684.1 + 6139 0.79 0.315866
Target:  5'- -cGUCGUCGUUGAGCaguUCGACGGCGGcGg -3'
miRNA:   3'- caUAGCGGCAGCUUG---AGCUGUUGCC-C- -5'
19151 5' -51.7 NC_004684.1 + 6785 0.7 0.784381
Target:  5'- -cAUCGCCGgUGcACUgGACGACGGc -3'
miRNA:   3'- caUAGCGGCaGCuUGAgCUGUUGCCc -5'
19151 5' -51.7 NC_004684.1 + 11234 0.67 0.908915
Target:  5'- -cGUCGCCGUCG---UCGGCca-GGGc -3'
miRNA:   3'- caUAGCGGCAGCuugAGCUGuugCCC- -5'
19151 5' -51.7 NC_004684.1 + 11829 0.68 0.856326
Target:  5'- ---cCGCUGUCcGGCgacuggcgcgacuUCGGCAACGGGu -3'
miRNA:   3'- cauaGCGGCAGcUUG-------------AGCUGUUGCCC- -5'
19151 5' -51.7 NC_004684.1 + 12073 0.67 0.921344
Target:  5'- ----aGCCGUCGGcgaACUCGAuCGGCaGGc -3'
miRNA:   3'- cauagCGGCAGCU---UGAGCU-GUUGcCC- -5'
19151 5' -51.7 NC_004684.1 + 13654 0.67 0.915265
Target:  5'- gGUGUUccugGCCGUCGAACcCGGCAccauGCcGGa -3'
miRNA:   3'- -CAUAG----CGGCAGCUUGaGCUGU----UGcCC- -5'
19151 5' -51.7 NC_004684.1 + 15461 1.1 0.003076
Target:  5'- gGUAUCGCCGUCGAACUCGACAACGGGu -3'
miRNA:   3'- -CAUAGCGGCAGCUUGAGCUGUUGCCC- -5'
19151 5' -51.7 NC_004684.1 + 17106 0.71 0.701689
Target:  5'- -aGUCGCCGUCGGGCcUGGCGcUGGc -3'
miRNA:   3'- caUAGCGGCAGCUUGaGCUGUuGCCc -5'
19151 5' -51.7 NC_004684.1 + 17163 0.81 0.258651
Target:  5'- -cGUCGCCGUCGAGCUgGuACAGCcuuGGGu -3'
miRNA:   3'- caUAGCGGCAGCUUGAgC-UGUUG---CCC- -5'
19151 5' -51.7 NC_004684.1 + 20482 0.66 0.947659
Target:  5'- ---gCGCaaCGUCGGACUCGACAccaucacgccguAUGGu -3'
miRNA:   3'- cauaGCG--GCAGCUUGAGCUGU------------UGCCc -5'
19151 5' -51.7 NC_004684.1 + 20813 0.74 0.582029
Target:  5'- ---cCGCCGUCGAGCgCGAC--UGGGa -3'
miRNA:   3'- cauaGCGGCAGCUUGaGCUGuuGCCC- -5'
19151 5' -51.7 NC_004684.1 + 22439 0.72 0.680125
Target:  5'- -cAUCGCCGUCGGcg-CGGCGGCGa- -3'
miRNA:   3'- caUAGCGGCAGCUugaGCUGUUGCcc -5'
19151 5' -51.7 NC_004684.1 + 23212 0.68 0.888263
Target:  5'- ----gGCCGcCGGuggCGACGGCGGGu -3'
miRNA:   3'- cauagCGGCaGCUugaGCUGUUGCCC- -5'
19151 5' -51.7 NC_004684.1 + 23973 0.76 0.457023
Target:  5'- --cUCGCCGggccUCGggUUCGGCGGCGGc -3'
miRNA:   3'- cauAGCGGC----AGCuuGAGCUGUUGCCc -5'
19151 5' -51.7 NC_004684.1 + 24753 0.67 0.914642
Target:  5'- -cAUCGCUGgCGGcaccagcACcggCGGCGGCGGGg -3'
miRNA:   3'- caUAGCGGCaGCU-------UGa--GCUGUUGCCC- -5'
19151 5' -51.7 NC_004684.1 + 26716 0.67 0.908915
Target:  5'- -cGUCGCCaccuugcugGcCGAGCgCGACuGGCGGGg -3'
miRNA:   3'- caUAGCGG---------CaGCUUGaGCUG-UUGCCC- -5'
19151 5' -51.7 NC_004684.1 + 29325 0.78 0.339658
Target:  5'- -cGUCGCCGUUGAGCUucuUGGCcuCGGGg -3'
miRNA:   3'- caUAGCGGCAGCUUGA---GCUGuuGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.