miRNA display CGI


Results 21 - 40 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19158 3' -55.2 NC_004684.1 + 6724 0.66 0.795744
Target:  5'- aGCCGAaGAAagGCGACaCCUGgcugGCCCGGa -3'
miRNA:   3'- -UGGCUgCUU--UGUUGgGGGCa---UGGGCU- -5'
19158 3' -55.2 NC_004684.1 + 9298 0.67 0.766643
Target:  5'- cGCCGACGGuGGCGcuACCCCCcg--CCGAg -3'
miRNA:   3'- -UGGCUGCU-UUGU--UGGGGGcaugGGCU- -5'
19158 3' -55.2 NC_004684.1 + 9475 0.67 0.736358
Target:  5'- aGCUGGCG-GGCAagcGCagCCGUACCCGGu -3'
miRNA:   3'- -UGGCUGCuUUGU---UGggGGCAUGGGCU- -5'
19158 3' -55.2 NC_004684.1 + 9982 0.66 0.786193
Target:  5'- uUCGACGcgcuCGGCaUCCCGUugCCGGa -3'
miRNA:   3'- uGGCUGCuuu-GUUG-GGGGCAugGGCU- -5'
19158 3' -55.2 NC_004684.1 + 10061 0.73 0.389882
Target:  5'- aGCCGugGuuuGACGacACCCCCGUgguGCgCCGGg -3'
miRNA:   3'- -UGGCugCu--UUGU--UGGGGGCA---UG-GGCU- -5'
19158 3' -55.2 NC_004684.1 + 10957 0.66 0.814348
Target:  5'- gAUCGugGugGCGGCCUCCuugacCCCGAg -3'
miRNA:   3'- -UGGCugCuuUGUUGGGGGcau--GGGCU- -5'
19158 3' -55.2 NC_004684.1 + 12098 0.71 0.514301
Target:  5'- cGCgCGGCGGccaucacGCAACCCCCGacCCCGGc -3'
miRNA:   3'- -UG-GCUGCUu------UGUUGGGGGCauGGGCU- -5'
19158 3' -55.2 NC_004684.1 + 12415 0.68 0.705175
Target:  5'- cGCUGugGucGGCGGCCaCCCGUucACCCc- -3'
miRNA:   3'- -UGGCugCu-UUGUUGG-GGGCA--UGGGcu -5'
19158 3' -55.2 NC_004684.1 + 12632 0.73 0.426102
Target:  5'- cACCGGCGAGGaacuGACCCCCGacgaugUGCgCGAg -3'
miRNA:   3'- -UGGCUGCUUUg---UUGGGGGC------AUGgGCU- -5'
19158 3' -55.2 NC_004684.1 + 12686 0.67 0.766643
Target:  5'- gGCCGACGAGGCcAUUUCCGcUGCCaucgcaGAa -3'
miRNA:   3'- -UGGCUGCUUUGuUGGGGGC-AUGGg-----CU- -5'
19158 3' -55.2 NC_004684.1 + 12785 0.67 0.766643
Target:  5'- gGCCaACGAgGACAacggcACCCCCGccgacgacgcGCCCGAg -3'
miRNA:   3'- -UGGcUGCU-UUGU-----UGGGGGCa---------UGGGCU- -5'
19158 3' -55.2 NC_004684.1 + 13102 0.67 0.736358
Target:  5'- gGCCGAUGc-GCGcACCCCCG-GCCgGGu -3'
miRNA:   3'- -UGGCUGCuuUGU-UGGGGGCaUGGgCU- -5'
19158 3' -55.2 NC_004684.1 + 13870 0.67 0.746567
Target:  5'- cACCGACGAcACcgUCCUgG-GCCCGGa -3'
miRNA:   3'- -UGGCUGCUuUGuuGGGGgCaUGGGCU- -5'
19158 3' -55.2 NC_004684.1 + 13909 0.69 0.639102
Target:  5'- cAUCGACGccuaccuggcCAACCaCCCGUugCCGGu -3'
miRNA:   3'- -UGGCUGCuuu-------GUUGG-GGGCAugGGCU- -5'
19158 3' -55.2 NC_004684.1 + 14834 0.68 0.67338
Target:  5'- cGCCGugGu-GCGucGCCCCCGaugACuuGAc -3'
miRNA:   3'- -UGGCugCuuUGU--UGGGGGCa--UGggCU- -5'
19158 3' -55.2 NC_004684.1 + 14961 0.71 0.524581
Target:  5'- gGCCGACauca-GACCCCCG-GCCUGGa -3'
miRNA:   3'- -UGGCUGcuuugUUGGGGGCaUGGGCU- -5'
19158 3' -55.2 NC_004684.1 + 15697 0.67 0.72605
Target:  5'- cACCGACGccaccGGCAucguGCUCCCGgagACaCCGAc -3'
miRNA:   3'- -UGGCUGCu----UUGU----UGGGGGCa--UG-GGCU- -5'
19158 3' -55.2 NC_004684.1 + 16788 0.73 0.426102
Target:  5'- cGCCGAUGAcccgcCGACCgCCG-ACCCGAc -3'
miRNA:   3'- -UGGCUGCUuu---GUUGGgGGCaUGGGCU- -5'
19158 3' -55.2 NC_004684.1 + 17014 0.67 0.72605
Target:  5'- gGCCGACGAGAauaAGCaCCaCGccGCCCGGu -3'
miRNA:   3'- -UGGCUGCUUUg--UUGgGG-GCa-UGGGCU- -5'
19158 3' -55.2 NC_004684.1 + 17689 0.71 0.48398
Target:  5'- cGCCGcCGAGcGCGugCCCgGUGCCCu- -3'
miRNA:   3'- -UGGCuGCUU-UGUugGGGgCAUGGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.