miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19158 3' -55.2 NC_004684.1 + 266 0.67 0.746567
Target:  5'- gGCCGACGGcgaGGCCUUCGUgcacACCUGGc -3'
miRNA:   3'- -UGGCUGCUuugUUGGGGGCA----UGGGCU- -5'
19158 3' -55.2 NC_004684.1 + 311 0.67 0.766643
Target:  5'- gGCCGcCGAGGcCAACgCCCGcACCgGGu -3'
miRNA:   3'- -UGGCuGCUUU-GUUGgGGGCaUGGgCU- -5'
19158 3' -55.2 NC_004684.1 + 633 0.75 0.316095
Target:  5'- gGCCGACGAGcacgGCGACCCCaaggACaCCGAc -3'
miRNA:   3'- -UGGCUGCUU----UGUUGGGGgca-UG-GGCU- -5'
19158 3' -55.2 NC_004684.1 + 840 0.69 0.630511
Target:  5'- uCCGGUGAGGCGcacaacgccuACCgCCGUGCCCGc -3'
miRNA:   3'- uGGCUGCUUUGU----------UGGgGGCAUGGGCu -5'
19158 3' -55.2 NC_004684.1 + 980 0.69 0.609046
Target:  5'- -aCGGCGGGACgGACCCgCC--GCCCGAg -3'
miRNA:   3'- ugGCUGCUUUG-UUGGG-GGcaUGGGCU- -5'
19158 3' -55.2 NC_004684.1 + 1348 0.66 0.786193
Target:  5'- cGCCGACGcgcucaAGCUCCCGUucuuCUCGGu -3'
miRNA:   3'- -UGGCUGCuuug--UUGGGGGCAu---GGGCU- -5'
19158 3' -55.2 NC_004684.1 + 2404 0.66 0.805132
Target:  5'- cGCUGGCGAGccGCAGaCCCgCGUcgcggucaucgACCUGAa -3'
miRNA:   3'- -UGGCUGCUU--UGUU-GGGgGCA-----------UGGGCU- -5'
19158 3' -55.2 NC_004684.1 + 3067 0.75 0.308578
Target:  5'- cGCCGAUGAu-CGACCCCCGcuccgugcuCCCGGu -3'
miRNA:   3'- -UGGCUGCUuuGUUGGGGGCau-------GGGCU- -5'
19158 3' -55.2 NC_004684.1 + 3732 0.66 0.814348
Target:  5'- cACCGACGAAAC--CCCCgaagaCGUGCaguuCGAc -3'
miRNA:   3'- -UGGCUGCUUUGuuGGGG-----GCAUGg---GCU- -5'
19158 3' -55.2 NC_004684.1 + 4158 0.68 0.662693
Target:  5'- cACCGugGAcGCGAUCauggCCCGguugcGCCCGGc -3'
miRNA:   3'- -UGGCugCUuUGUUGG----GGGCa----UGGGCU- -5'
19158 3' -55.2 NC_004684.1 + 4162 0.67 0.715651
Target:  5'- gGCCGACGcccGGCAacgaGCCgCCgGUGgCCGAg -3'
miRNA:   3'- -UGGCUGCu--UUGU----UGG-GGgCAUgGGCU- -5'
19158 3' -55.2 NC_004684.1 + 4264 0.73 0.40774
Target:  5'- cCCGGCGGAAUGGCCUCU--ACCCGGa -3'
miRNA:   3'- uGGCUGCUUUGUUGGGGGcaUGGGCU- -5'
19158 3' -55.2 NC_004684.1 + 4364 0.68 0.662693
Target:  5'- uCCGACGAcuucuCGACCCCgGaGgCCGAg -3'
miRNA:   3'- uGGCUGCUuu---GUUGGGGgCaUgGGCU- -5'
19158 3' -55.2 NC_004684.1 + 4502 0.67 0.746567
Target:  5'- cCCGcCGAGcugGCGGCCaCCGUggACCCGGg -3'
miRNA:   3'- uGGCuGCUU---UGUUGGgGGCA--UGGGCU- -5'
19158 3' -55.2 NC_004684.1 + 4518 0.68 0.684029
Target:  5'- gGCCGGgauccuguucCGggGCGAgaCCCCGgagGCCCGc -3'
miRNA:   3'- -UGGCU----------GCuuUGUUg-GGGGCa--UGGGCu -5'
19158 3' -55.2 NC_004684.1 + 4566 0.67 0.755661
Target:  5'- cACCGACacccggucggccuGAAAgcuCCCCCGccUGCCCGGc -3'
miRNA:   3'- -UGGCUG-------------CUUUguuGGGGGC--AUGGGCU- -5'
19158 3' -55.2 NC_004684.1 + 4683 0.77 0.244556
Target:  5'- gGCCGACuaccgcaaguCGACCCCCGUGgCCGAu -3'
miRNA:   3'- -UGGCUGcuuu------GUUGGGGGCAUgGGCU- -5'
19158 3' -55.2 NC_004684.1 + 5952 0.68 0.662693
Target:  5'- -gCGGCGAGACAauGCCgCCgGUGuCCCGu -3'
miRNA:   3'- ugGCUGCUUUGU--UGG-GGgCAU-GGGCu -5'
19158 3' -55.2 NC_004684.1 + 5977 0.69 0.609046
Target:  5'- gACCGGCcGAGCAAgUCCCG-GCCUGGc -3'
miRNA:   3'- -UGGCUGcUUUGUUgGGGGCaUGGGCU- -5'
19158 3' -55.2 NC_004684.1 + 6184 0.7 0.545367
Target:  5'- cGCCGACGcGAACGGCCaggUGUACgCCGAg -3'
miRNA:   3'- -UGGCUGC-UUUGUUGGgg-GCAUG-GGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.