miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19158 3' -55.2 NC_004684.1 + 37540 0.69 0.630511
Target:  5'- -gCGGCGGcGAUGACCCgCCGguggACCCGGu -3'
miRNA:   3'- ugGCUGCU-UUGUUGGG-GGCa---UGGGCU- -5'
19158 3' -55.2 NC_004684.1 + 56617 0.7 0.55586
Target:  5'- cACCGGCGAaccccGACAGCaaCCCGUcgACgCCGAa -3'
miRNA:   3'- -UGGCUGCU-----UUGUUGg-GGGCA--UG-GGCU- -5'
19158 3' -55.2 NC_004684.1 + 28632 0.7 0.55586
Target:  5'- uGCCGACGAugGACuACCCguuCCGgUGCCgCGAg -3'
miRNA:   3'- -UGGCUGCU--UUGuUGGG---GGC-AUGG-GCU- -5'
19158 3' -55.2 NC_004684.1 + 57830 0.7 0.55586
Target:  5'- cCCGGCGguGCuGGCCgCCgGUACCCGc -3'
miRNA:   3'- uGGCUGCuuUG-UUGG-GGgCAUGGGCu -5'
19158 3' -55.2 NC_004684.1 + 39369 0.7 0.577013
Target:  5'- gUCGGgGAAcCAGCCCuuGUacgGCCCGAu -3'
miRNA:   3'- uGGCUgCUUuGUUGGGggCA---UGGGCU- -5'
19158 3' -55.2 NC_004684.1 + 5977 0.69 0.609046
Target:  5'- gACCGGCcGAGCAAgUCCCG-GCCUGGc -3'
miRNA:   3'- -UGGCUGcUUUGUUgGGGGCaUGGGCU- -5'
19158 3' -55.2 NC_004684.1 + 24125 0.69 0.609046
Target:  5'- cGCCGAC---GCAGCagCCGUACCCGc -3'
miRNA:   3'- -UGGCUGcuuUGUUGggGGCAUGGGCu -5'
19158 3' -55.2 NC_004684.1 + 42033 0.69 0.619773
Target:  5'- gACCGACGAAugGGaggCCCUGaUGgCCGAc -3'
miRNA:   3'- -UGGCUGCUUugUUg--GGGGC-AUgGGCU- -5'
19158 3' -55.2 NC_004684.1 + 32461 0.69 0.630511
Target:  5'- cUCGGCG-GGCAACCUgCGUAUCCGc -3'
miRNA:   3'- uGGCUGCuUUGUUGGGgGCAUGGGCu -5'
19158 3' -55.2 NC_004684.1 + 12098 0.71 0.514301
Target:  5'- cGCgCGGCGGccaucacGCAACCCCCGacCCCGGc -3'
miRNA:   3'- -UG-GCUGCUu------UGUUGGGGGCauGGGCU- -5'
19158 3' -55.2 NC_004684.1 + 31244 0.72 0.464249
Target:  5'- uGCCGAUGuguucGACGGCCUCCGggacACCUGGa -3'
miRNA:   3'- -UGGCUGCu----UUGUUGGGGGCa---UGGGCU- -5'
19158 3' -55.2 NC_004684.1 + 22522 0.72 0.464249
Target:  5'- aGCUGACGcAGGCAGgCCUCGcucUGCCCGGu -3'
miRNA:   3'- -UGGCUGC-UUUGUUgGGGGC---AUGGGCU- -5'
19158 3' -55.2 NC_004684.1 + 30225 0.79 0.176455
Target:  5'- gAUCGGgGAGGCGGCCCCCGaACCCa- -3'
miRNA:   3'- -UGGCUgCUUUGUUGGGGGCaUGGGcu -5'
19158 3' -55.2 NC_004684.1 + 3067 0.75 0.308578
Target:  5'- cGCCGAUGAu-CGACCCCCGcuccgugcuCCCGGu -3'
miRNA:   3'- -UGGCUGCUuuGUUGGGGGCau-------GGGCU- -5'
19158 3' -55.2 NC_004684.1 + 633 0.75 0.316095
Target:  5'- gGCCGACGAGcacgGCGACCCCaaggACaCCGAc -3'
miRNA:   3'- -UGGCUGCUU----UGUUGGGGgca-UG-GGCU- -5'
19158 3' -55.2 NC_004684.1 + 47140 0.74 0.33947
Target:  5'- -gUGGCGuAGGCGGCCCCgGUGCCCa- -3'
miRNA:   3'- ugGCUGC-UUUGUUGGGGgCAUGGGcu -5'
19158 3' -55.2 NC_004684.1 + 54898 0.73 0.381146
Target:  5'- uGCgGcACGAGGCGGCCCUgGUGgCCGAg -3'
miRNA:   3'- -UGgC-UGCUUUGUUGGGGgCAUgGGCU- -5'
19158 3' -55.2 NC_004684.1 + 10061 0.73 0.389882
Target:  5'- aGCCGugGuuuGACGacACCCCCGUgguGCgCCGGg -3'
miRNA:   3'- -UGGCugCu--UUGU--UGGGGGCA---UG-GGCU- -5'
19158 3' -55.2 NC_004684.1 + 20712 0.73 0.398747
Target:  5'- cACCGACccGGucACCCCCGaACCCGAg -3'
miRNA:   3'- -UGGCUGcuUUguUGGGGGCaUGGGCU- -5'
19158 3' -55.2 NC_004684.1 + 12632 0.73 0.426102
Target:  5'- cACCGGCGAGGaacuGACCCCCGacgaugUGCgCGAg -3'
miRNA:   3'- -UGGCUGCUUUg---UUGGGGGC------AUGgGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.