Results 1 - 20 of 89 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19158 | 3' | -55.2 | NC_004684.1 | + | 18756 | 1.09 | 0.001616 |
Target: 5'- cACCGACGAAACAACCCCCGUACCCGAg -3' miRNA: 3'- -UGGCUGCUUUGUUGGGGGCAUGGGCU- -5' |
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19158 | 3' | -55.2 | NC_004684.1 | + | 30225 | 0.79 | 0.176455 |
Target: 5'- gAUCGGgGAGGCGGCCCCCGaACCCa- -3' miRNA: 3'- -UGGCUgCUUUGUUGGGGGCaUGGGcu -5' |
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19158 | 3' | -55.2 | NC_004684.1 | + | 4683 | 0.77 | 0.244556 |
Target: 5'- gGCCGACuaccgcaaguCGACCCCCGUGgCCGAu -3' miRNA: 3'- -UGGCUGcuuu------GUUGGGGGCAUgGGCU- -5' |
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19158 | 3' | -55.2 | NC_004684.1 | + | 30757 | 0.76 | 0.259777 |
Target: 5'- cGCUGACGAAccGCAGCUCCacgCGUGCCUGGa -3' miRNA: 3'- -UGGCUGCUU--UGUUGGGG---GCAUGGGCU- -5' |
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19158 | 3' | -55.2 | NC_004684.1 | + | 33761 | 0.75 | 0.301199 |
Target: 5'- cGCUGACGAggUAGCCgCCCGacgAUCCGGc -3' miRNA: 3'- -UGGCUGCUuuGUUGG-GGGCa--UGGGCU- -5' |
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19158 | 3' | -55.2 | NC_004684.1 | + | 3067 | 0.75 | 0.308578 |
Target: 5'- cGCCGAUGAu-CGACCCCCGcuccgugcuCCCGGu -3' miRNA: 3'- -UGGCUGCUuuGUUGGGGGCau-------GGGCU- -5' |
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19158 | 3' | -55.2 | NC_004684.1 | + | 633 | 0.75 | 0.316095 |
Target: 5'- gGCCGACGAGcacgGCGACCCCaaggACaCCGAc -3' miRNA: 3'- -UGGCUGCUU----UGUUGGGGgca-UG-GGCU- -5' |
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19158 | 3' | -55.2 | NC_004684.1 | + | 47140 | 0.74 | 0.33947 |
Target: 5'- -gUGGCGuAGGCGGCCCCgGUGCCCa- -3' miRNA: 3'- ugGCUGC-UUUGUUGGGGgCAUGGGcu -5' |
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19158 | 3' | -55.2 | NC_004684.1 | + | 54898 | 0.73 | 0.381146 |
Target: 5'- uGCgGcACGAGGCGGCCCUgGUGgCCGAg -3' miRNA: 3'- -UGgC-UGCUUUGUUGGGGgCAUgGGCU- -5' |
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19158 | 3' | -55.2 | NC_004684.1 | + | 10061 | 0.73 | 0.389882 |
Target: 5'- aGCCGugGuuuGACGacACCCCCGUgguGCgCCGGg -3' miRNA: 3'- -UGGCugCu--UUGU--UGGGGGCA---UG-GGCU- -5' |
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19158 | 3' | -55.2 | NC_004684.1 | + | 20712 | 0.73 | 0.398747 |
Target: 5'- cACCGACccGGucACCCCCGaACCCGAg -3' miRNA: 3'- -UGGCUGcuUUguUGGGGGCaUGGGCU- -5' |
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19158 | 3' | -55.2 | NC_004684.1 | + | 4264 | 0.73 | 0.40774 |
Target: 5'- cCCGGCGGAAUGGCCUCU--ACCCGGa -3' miRNA: 3'- uGGCUGCUUUGUUGGGGGcaUGGGCU- -5' |
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19158 | 3' | -55.2 | NC_004684.1 | + | 48588 | 0.73 | 0.411373 |
Target: 5'- aGCCuGACGAguaacccccacaaacGAaCAACCCCCGUACCgGc -3' miRNA: 3'- -UGG-CUGCU---------------UU-GUUGGGGGCAUGGgCu -5' |
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19158 | 3' | -55.2 | NC_004684.1 | + | 12632 | 0.73 | 0.426102 |
Target: 5'- cACCGGCGAGGaacuGACCCCCGacgaugUGCgCGAg -3' miRNA: 3'- -UGGCUGCUUUg---UUGGGGGC------AUGgGCU- -5' |
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19158 | 3' | -55.2 | NC_004684.1 | + | 16788 | 0.73 | 0.426102 |
Target: 5'- cGCCGAUGAcccgcCGACCgCCG-ACCCGAc -3' miRNA: 3'- -UGGCUGCUuu---GUUGGgGGCaUGGGCU- -5' |
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19158 | 3' | -55.2 | NC_004684.1 | + | 31244 | 0.72 | 0.464249 |
Target: 5'- uGCCGAUGuguucGACGGCCUCCGggacACCUGGa -3' miRNA: 3'- -UGGCUGCu----UUGUUGGGGGCa---UGGGCU- -5' |
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19158 | 3' | -55.2 | NC_004684.1 | + | 22522 | 0.72 | 0.464249 |
Target: 5'- aGCUGACGcAGGCAGgCCUCGcucUGCCCGGu -3' miRNA: 3'- -UGGCUGC-UUUGUUgGGGGC---AUGGGCU- -5' |
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19158 | 3' | -55.2 | NC_004684.1 | + | 17689 | 0.71 | 0.48398 |
Target: 5'- cGCCGcCGAGcGCGugCCCgGUGCCCu- -3' miRNA: 3'- -UGGCuGCUU-UGUugGGGgCAUGGGcu -5' |
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19158 | 3' | -55.2 | NC_004684.1 | + | 12098 | 0.71 | 0.514301 |
Target: 5'- cGCgCGGCGGccaucacGCAACCCCCGacCCCGGc -3' miRNA: 3'- -UG-GCUGCUu------UGUUGGGGGCauGGGCU- -5' |
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19158 | 3' | -55.2 | NC_004684.1 | + | 14961 | 0.71 | 0.524581 |
Target: 5'- gGCCGACauca-GACCCCCG-GCCUGGa -3' miRNA: 3'- -UGGCUGcuuugUUGGGGGCaUGGGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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