miRNA display CGI


Results 21 - 40 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19183 3' -54.8 NC_004684.1 + 57901 0.66 0.786109
Target:  5'- gGCCGGGCUGa-----AGGugGCCGGGc -3'
miRNA:   3'- -CGGCUCGAUgucgucUUCugUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 26853 0.66 0.776321
Target:  5'- gGUCGAGCaccaGCgAGCAGGAGGCGgCGcaGGa -3'
miRNA:   3'- -CGGCUCGa---UG-UCGUCUUCUGUgGC--CC- -5'
19183 3' -54.8 NC_004684.1 + 27324 0.66 0.776321
Target:  5'- gGCC-AGCUuugacgACGGCGGuaucgccguGGGCACCGGc -3'
miRNA:   3'- -CGGcUCGA------UGUCGUCu--------UCUGUGGCCc -5'
19183 3' -54.8 NC_004684.1 + 7974 0.66 0.80521
Target:  5'- cCCGGaCggACGGCAgGAGGACGCCuGGa -3'
miRNA:   3'- cGGCUcGa-UGUCGU-CUUCUGUGGcCC- -5'
19183 3' -54.8 NC_004684.1 + 19335 0.66 0.795743
Target:  5'- cGCCGuGGCcg-AGCGGGAGGCGCUGa- -3'
miRNA:   3'- -CGGC-UCGaugUCGUCUUCUGUGGCcc -5'
19183 3' -54.8 NC_004684.1 + 20546 0.66 0.795743
Target:  5'- gGCCaGGCauucgucCAGCuauAGGAGGCACCGuGGa -3'
miRNA:   3'- -CGGcUCGau-----GUCG---UCUUCUGUGGC-CC- -5'
19183 3' -54.8 NC_004684.1 + 62898 0.66 0.80521
Target:  5'- uGCCGuuGCcACGGCGGGccAGGCccugGCCGGu -3'
miRNA:   3'- -CGGCu-CGaUGUCGUCU--UCUG----UGGCCc -5'
19183 3' -54.8 NC_004684.1 + 57558 0.66 0.786109
Target:  5'- cGCCGAGCUGCGcCGGuuggccGACAUCGc- -3'
miRNA:   3'- -CGGCUCGAUGUcGUCuu----CUGUGGCcc -5'
19183 3' -54.8 NC_004684.1 + 64756 0.67 0.756322
Target:  5'- gGCCGAGCUGguGCc--AGGCGUCGGu -3'
miRNA:   3'- -CGGCUCGAUguCGucuUCUGUGGCCc -5'
19183 3' -54.8 NC_004684.1 + 66161 0.67 0.746133
Target:  5'- aCCGGGUUGCuGGCAGAuccaGCCGGu -3'
miRNA:   3'- cGGCUCGAUG-UCGUCUucugUGGCCc -5'
19183 3' -54.8 NC_004684.1 + 6835 0.67 0.72543
Target:  5'- aGCUGGcCUACGGCgcgaaGGgcGACGCCGuGGu -3'
miRNA:   3'- -CGGCUcGAUGUCG-----UCuuCUGUGGC-CC- -5'
19183 3' -54.8 NC_004684.1 + 56192 0.67 0.72543
Target:  5'- aUCGAGCgccCGGUGGAugAGACGCUGuGGg -3'
miRNA:   3'- cGGCUCGau-GUCGUCU--UCUGUGGC-CC- -5'
19183 3' -54.8 NC_004684.1 + 1813 0.67 0.729603
Target:  5'- cGCCGgugucaucGGcCUGCucGCAGAAGAacaucagcggaccaaCGCCGGGc -3'
miRNA:   3'- -CGGC--------UC-GAUGu-CGUCUUCU---------------GUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 14131 0.67 0.735832
Target:  5'- aGCCGAug-ACAcCGGAGcGCGCCGGGa -3'
miRNA:   3'- -CGGCUcgaUGUcGUCUUcUGUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 41321 0.67 0.766389
Target:  5'- -aUGGGCUACGGCAccgcgaccGccGACGgCCGGGc -3'
miRNA:   3'- cgGCUCGAUGUCGU--------CuuCUGU-GGCCC- -5'
19183 3' -54.8 NC_004684.1 + 53359 0.67 0.735832
Target:  5'- gGCCGGG-UACAGCAGGAcguuGACcgaGuuGGGc -3'
miRNA:   3'- -CGGCUCgAUGUCGUCUU----CUG---UggCCC- -5'
19183 3' -54.8 NC_004684.1 + 51124 0.67 0.756322
Target:  5'- cGUCGGGCc-CGGCGcGA--ACACCGGGc -3'
miRNA:   3'- -CGGCUCGauGUCGU-CUucUGUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 25936 0.67 0.756322
Target:  5'- cGCCGGGgU-CAGCccacuGACACCGGcGg -3'
miRNA:   3'- -CGGCUCgAuGUCGucuu-CUGUGGCC-C- -5'
19183 3' -54.8 NC_004684.1 + 42007 0.67 0.735832
Target:  5'- cGCUGuGC-GCGGCGGcguAGGCgcugACCGGGu -3'
miRNA:   3'- -CGGCuCGaUGUCGUCu--UCUG----UGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 59440 0.67 0.735832
Target:  5'- gGUgGAGCUGCccauggccuuGCGGAAGGCcuuGCCuGGGu -3'
miRNA:   3'- -CGgCUCGAUGu---------CGUCUUCUG---UGG-CCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.