miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19183 3' -54.8 NC_004684.1 + 59693 0.66 0.823609
Target:  5'- cGCCGAGCUGC-GCGGGGug---CGGGu -3'
miRNA:   3'- -CGGCUCGAUGuCGUCUUcugugGCCC- -5'
19183 3' -54.8 NC_004684.1 + 62898 0.66 0.80521
Target:  5'- uGCCGuuGCcACGGCGGGccAGGCccugGCCGGu -3'
miRNA:   3'- -CGGCu-CGaUGUCGUCU--UCUG----UGGCCc -5'
19183 3' -54.8 NC_004684.1 + 20546 0.66 0.795743
Target:  5'- gGCCaGGCauucgucCAGCuauAGGAGGCACCGuGGa -3'
miRNA:   3'- -CGGcUCGau-----GUCG---UCUUCUGUGGC-CC- -5'
19183 3' -54.8 NC_004684.1 + 62718 0.66 0.795743
Target:  5'- gGuuGAGCUGCAaggcacGCAGGAcgguGuACACCGaGGc -3'
miRNA:   3'- -CggCUCGAUGU------CGUCUU----C-UGUGGC-CC- -5'
19183 3' -54.8 NC_004684.1 + 5607 0.66 0.776321
Target:  5'- gGCCGAGCUgGCGcGCAuGGugcuggagcuGGACGCCuGGu -3'
miRNA:   3'- -CGGCUCGA-UGU-CGU-CU----------UCUGUGGcCC- -5'
19183 3' -54.8 NC_004684.1 + 67259 0.66 0.775335
Target:  5'- uCCGGGCUggcgucgcugaacACGGguGcAGGuguuGCGCCGGGc -3'
miRNA:   3'- cGGCUCGA-------------UGUCguC-UUC----UGUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 47782 0.66 0.823609
Target:  5'- cGCCGAGCgucaccgcCAGCAccucGGcCGCCGGa -3'
miRNA:   3'- -CGGCUCGau------GUCGUcu--UCuGUGGCCc -5'
19183 3' -54.8 NC_004684.1 + 8830 0.66 0.795743
Target:  5'- cGCaaGGGCUACAGCAaGGAGAagGCCGc- -3'
miRNA:   3'- -CGg-CUCGAUGUCGU-CUUCUg-UGGCcc -5'
19183 3' -54.8 NC_004684.1 + 61293 0.66 0.814502
Target:  5'- cGCCGGGUcgauuuccgGCAGCAcc-GcCGCCGGGc -3'
miRNA:   3'- -CGGCUCGa--------UGUCGUcuuCuGUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 9320 0.66 0.814502
Target:  5'- cGCCGAGgaACAGgAcGggGACGaggaggccuCCGGu -3'
miRNA:   3'- -CGGCUCgaUGUCgU-CuuCUGU---------GGCCc -5'
19183 3' -54.8 NC_004684.1 + 7974 0.66 0.80521
Target:  5'- cCCGGaCggACGGCAgGAGGACGCCuGGa -3'
miRNA:   3'- cGGCUcGa-UGUCGU-CUUCUGUGGcCC- -5'
19183 3' -54.8 NC_004684.1 + 57558 0.66 0.786109
Target:  5'- cGCCGAGCUGCGcCGGuuggccGACAUCGc- -3'
miRNA:   3'- -CGGCUCGAUGUcGUCuu----CUGUGGCcc -5'
19183 3' -54.8 NC_004684.1 + 26853 0.66 0.776321
Target:  5'- gGUCGAGCaccaGCgAGCAGGAGGCGgCGcaGGa -3'
miRNA:   3'- -CGGCUCGa---UG-UCGUCUUCUGUgGC--CC- -5'
19183 3' -54.8 NC_004684.1 + 26929 0.66 0.776321
Target:  5'- cGCCGAGacccccgaGCAGCGGccgccuGGGCACCGc- -3'
miRNA:   3'- -CGGCUCga------UGUCGUCu-----UCUGUGGCcc -5'
19183 3' -54.8 NC_004684.1 + 7135 0.66 0.795743
Target:  5'- cGCCGAGgUACAccCGGAAGGuggccaccgcCugCGGGu -3'
miRNA:   3'- -CGGCUCgAUGUc-GUCUUCU----------GugGCCC- -5'
19183 3' -54.8 NC_004684.1 + 57901 0.66 0.786109
Target:  5'- gGCCGGGCUGa-----AGGugGCCGGGc -3'
miRNA:   3'- -CGGCUCGAUgucgucUUCugUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 6838 0.66 0.80521
Target:  5'- gGUCGAGUUcgaGGguGucgacGGCACCGGGc -3'
miRNA:   3'- -CGGCUCGAug-UCguCuu---CUGUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 19335 0.66 0.795743
Target:  5'- cGCCGuGGCcg-AGCGGGAGGCGCUGa- -3'
miRNA:   3'- -CGGC-UCGaugUCGUCUUCUGUGGCcc -5'
19183 3' -54.8 NC_004684.1 + 65884 0.66 0.773356
Target:  5'- cGuuGAGCgcgGCGcGCAGGuuGGccaccagggccgccGCACCGGGc -3'
miRNA:   3'- -CggCUCGa--UGU-CGUCU--UC--------------UGUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 27324 0.66 0.776321
Target:  5'- gGCC-AGCUuugacgACGGCGGuaucgccguGGGCACCGGc -3'
miRNA:   3'- -CGGcUCGA------UGUCGUCu--------UCUGUGGCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.