miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19183 3' -54.8 NC_004684.1 + 30022 1.13 0.000798
Target:  5'- gGCCGAGCUACAGCAGAAGACACCGGGg -3'
miRNA:   3'- -CGGCUCGAUGUCGUCUUCUGUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 6167 0.81 0.128845
Target:  5'- gGCC-AGCgUGCGGCGGuAGGCACCGGGc -3'
miRNA:   3'- -CGGcUCG-AUGUCGUCuUCUGUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 43290 0.77 0.237762
Target:  5'- uGCCGGGCUGCGGCAccuuGAAGu--UCGGGa -3'
miRNA:   3'- -CGGCUCGAUGUCGU----CUUCuguGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 4504 0.77 0.237762
Target:  5'- cGCCGAGCUgGCGGCcaccguGGAC-CCGGGg -3'
miRNA:   3'- -CGGCUCGA-UGUCGucu---UCUGuGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 30495 0.76 0.269886
Target:  5'- cCCGAGCgUGgGGCGGcuGGCGCUGGGg -3'
miRNA:   3'- cGGCUCG-AUgUCGUCuuCUGUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 20230 0.76 0.276716
Target:  5'- gGCCGccGCUACGGUgcuccuGGGCACCGGGg -3'
miRNA:   3'- -CGGCu-CGAUGUCGucu---UCUGUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 58654 0.75 0.305416
Target:  5'- cGCCGGGC-GCGGCGGcgaACAUCGGGa -3'
miRNA:   3'- -CGGCUCGaUGUCGUCuucUGUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 54435 0.75 0.305416
Target:  5'- cGCCGcGU--CGGCGGGAG-CACCGGGg -3'
miRNA:   3'- -CGGCuCGauGUCGUCUUCuGUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 3102 0.74 0.372069
Target:  5'- uCCGAGCUguucgggcccaccuuGCAGgGGGAGgggccguACGCCGGGg -3'
miRNA:   3'- cGGCUCGA---------------UGUCgUCUUC-------UGUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 8145 0.74 0.378124
Target:  5'- uGCuCGGG-UGCAGCAGAucgucaaccAGAuCGCCGGGg -3'
miRNA:   3'- -CG-GCUCgAUGUCGUCU---------UCU-GUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 48945 0.73 0.386888
Target:  5'- cGCCGAacgGCacguCGGCGGGcggGGugGCCGGGg -3'
miRNA:   3'- -CGGCU---CGau--GUCGUCU---UCugUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 24772 0.73 0.386888
Target:  5'- aCCG-GCgGCGGCGGggGAggUGCCGGGu -3'
miRNA:   3'- cGGCuCGaUGUCGUCuuCU--GUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 42391 0.73 0.395785
Target:  5'- cGCUGAGCgcgaccgggUugGGCAGGaugccgcccugGGACACCGGa -3'
miRNA:   3'- -CGGCUCG---------AugUCGUCU-----------UCUGUGGCCc -5'
19183 3' -54.8 NC_004684.1 + 25816 0.73 0.395785
Target:  5'- gGCCGGGUgGCGGcCAGAAcGGCAUCGGcGg -3'
miRNA:   3'- -CGGCUCGaUGUC-GUCUU-CUGUGGCC-C- -5'
19183 3' -54.8 NC_004684.1 + 6477 0.73 0.423252
Target:  5'- aGCUGGGCgGCGGUGGuguucGACAUCGGGu -3'
miRNA:   3'- -CGGCUCGaUGUCGUCuu---CUGUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 35416 0.72 0.432659
Target:  5'- cGCCGAGgaGC-GCGGGAGGCgauggucccGCCGGa -3'
miRNA:   3'- -CGGCUCgaUGuCGUCUUCUG---------UGGCCc -5'
19183 3' -54.8 NC_004684.1 + 9914 0.72 0.442186
Target:  5'- uCCGGGCUGaccgaGGCGGugauuGugGCCGGGc -3'
miRNA:   3'- cGGCUCGAUg----UCGUCuu---CugUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 62806 0.72 0.451831
Target:  5'- uGCCGGGCagGCGGgGGAgcuuucAGGCcgACCGGGu -3'
miRNA:   3'- -CGGCUCGa-UGUCgUCU------UCUG--UGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 65805 0.72 0.451831
Target:  5'- uGCCGuGCaccggGCAGguGAcccggAGGCACCGGcGg -3'
miRNA:   3'- -CGGCuCGa----UGUCguCU-----UCUGUGGCC-C- -5'
19183 3' -54.8 NC_004684.1 + 31870 0.72 0.46159
Target:  5'- -gCGAGCUGCccGCcGAcgugcugguGGACGCCGGGa -3'
miRNA:   3'- cgGCUCGAUGu-CGuCU---------UCUGUGGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.