miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19183 3' -54.8 NC_004684.1 + 540 0.71 0.491509
Target:  5'- cCCG-GCgaaaGGCcuGGAGGGCACCGGGu -3'
miRNA:   3'- cGGCuCGaug-UCG--UCUUCUGUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 681 0.71 0.532724
Target:  5'- aCCGAGUUcgccgcGCAGCGcAAGACcgccGCCGGGu -3'
miRNA:   3'- cGGCUCGA------UGUCGUcUUCUG----UGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 1445 0.66 0.814502
Target:  5'- gGCCGAGCUGgAcCaccuGGucGAgACCGGGc -3'
miRNA:   3'- -CGGCUCGAUgUcG----UCuuCUgUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 1813 0.67 0.729603
Target:  5'- cGCCGgugucaucGGcCUGCucGCAGAAGAacaucagcggaccaaCGCCGGGc -3'
miRNA:   3'- -CGGC--------UC-GAUGu-CGUCUUCU---------------GUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 3102 0.74 0.372069
Target:  5'- uCCGAGCUguucgggcccaccuuGCAGgGGGAGgggccguACGCCGGGg -3'
miRNA:   3'- cGGCUCGA---------------UGUCgUCUUC-------UGUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 4387 0.68 0.693728
Target:  5'- gGCCGAGCUGgucuaucgcgcCAGCaAGuccuGGcCGCCGGa -3'
miRNA:   3'- -CGGCUCGAU-----------GUCG-UCu---UCuGUGGCCc -5'
19183 3' -54.8 NC_004684.1 + 4504 0.77 0.237762
Target:  5'- cGCCGAGCUgGCGGCcaccguGGAC-CCGGGg -3'
miRNA:   3'- -CGGCUCGA-UGUCGucu---UCUGuGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 5607 0.66 0.776321
Target:  5'- gGCCGAGCUgGCGcGCAuGGugcuggagcuGGACGCCuGGu -3'
miRNA:   3'- -CGGCUCGA-UGU-CGU-CU----------UCUGUGGcCC- -5'
19183 3' -54.8 NC_004684.1 + 5666 0.67 0.766389
Target:  5'- uGCCucAGCcgUGGuCGGAGGugGCCGGGg -3'
miRNA:   3'- -CGGc-UCGauGUC-GUCUUCugUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 6070 0.71 0.532724
Target:  5'- cGCCGcGCU--GGUAGccGAUGCCGGGg -3'
miRNA:   3'- -CGGCuCGAugUCGUCuuCUGUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 6167 0.81 0.128845
Target:  5'- gGCC-AGCgUGCGGCGGuAGGCACCGGGc -3'
miRNA:   3'- -CGGcUCG-AUGUCGUCuUCUGUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 6477 0.73 0.423252
Target:  5'- aGCUGGGCgGCGGUGGuguucGACAUCGGGu -3'
miRNA:   3'- -CGGCUCGaUGUCGUCuu---CUGUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 6835 0.67 0.72543
Target:  5'- aGCUGGcCUACGGCgcgaaGGgcGACGCCGuGGu -3'
miRNA:   3'- -CGGCUcGAUGUCG-----UCuuCUGUGGC-CC- -5'
19183 3' -54.8 NC_004684.1 + 6838 0.66 0.80521
Target:  5'- gGUCGAGUUcgaGGguGucgacGGCACCGGGc -3'
miRNA:   3'- -CGGCUCGAug-UCguCuu---CUGUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 7135 0.66 0.795743
Target:  5'- cGCCGAGgUACAccCGGAAGGuggccaccgcCugCGGGu -3'
miRNA:   3'- -CGGCUCgAUGUc-GUCUUCU----------GugGCCC- -5'
19183 3' -54.8 NC_004684.1 + 7633 0.68 0.714938
Target:  5'- aGCC-AGCUcGCcguGGCGGGcguGGugACCGGGu -3'
miRNA:   3'- -CGGcUCGA-UG---UCGUCU---UCugUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 7785 0.71 0.532724
Target:  5'- gGUCGAGCauuggUGC-GCGGGAuGugACCGGGu -3'
miRNA:   3'- -CGGCUCG-----AUGuCGUCUU-CugUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 7974 0.66 0.80521
Target:  5'- cCCGGaCggACGGCAgGAGGACGCCuGGa -3'
miRNA:   3'- cGGCUcGa-UGUCGU-CUUCUGUGGcCC- -5'
19183 3' -54.8 NC_004684.1 + 8145 0.74 0.378124
Target:  5'- uGCuCGGG-UGCAGCAGAucgucaaccAGAuCGCCGGGg -3'
miRNA:   3'- -CG-GCUCgAUGUCGUCU---------UCU-GUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 8830 0.66 0.795743
Target:  5'- cGCaaGGGCUACAGCAaGGAGAagGCCGc- -3'
miRNA:   3'- -CGg-CUCGAUGUCGU-CUUCUg-UGGCcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.