miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19183 3' -54.8 NC_004684.1 + 32190 0.7 0.585839
Target:  5'- cGCCGucGUUcCAGCAGAucGGCAcguCCGGGa -3'
miRNA:   3'- -CGGCu-CGAuGUCGUCUu-CUGU---GGCCC- -5'
19183 3' -54.8 NC_004684.1 + 65805 0.72 0.451831
Target:  5'- uGCCGuGCaccggGCAGguGAcccggAGGCACCGGcGg -3'
miRNA:   3'- -CGGCuCGa----UGUCguCU-----UCUGUGGCC-C- -5'
19183 3' -54.8 NC_004684.1 + 31870 0.72 0.46159
Target:  5'- -gCGAGCUGCccGCcGAcgugcugguGGACGCCGGGa -3'
miRNA:   3'- cgGCUCGAUGu-CGuCU---------UCUGUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 540 0.71 0.491509
Target:  5'- cCCG-GCgaaaGGCcuGGAGGGCACCGGGu -3'
miRNA:   3'- cGGCuCGaug-UCG--UCUUCUGUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 28802 0.71 0.501682
Target:  5'- uCCGAGCUGguGCucGAcgguGugACCGGGc -3'
miRNA:   3'- cGGCUCGAUguCGu-CUu---CugUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 6070 0.71 0.532724
Target:  5'- cGCCGcGCU--GGUAGccGAUGCCGGGg -3'
miRNA:   3'- -CGGCuCGAugUCGUCuuCUGUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 64534 0.71 0.532724
Target:  5'- cGCCcAGCggcuCGGCGGccuuGGugACCGGGu -3'
miRNA:   3'- -CGGcUCGau--GUCGUCu---UCugUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 15900 0.7 0.553797
Target:  5'- aGCCGcagGGCguccCGGCAGAGGccuacccgGCACCGGa -3'
miRNA:   3'- -CGGC---UCGau--GUCGUCUUC--------UGUGGCCc -5'
19183 3' -54.8 NC_004684.1 + 28081 0.7 0.564427
Target:  5'- gGCCGGGCcGCcGCGcGAcccGCACCGGGu -3'
miRNA:   3'- -CGGCUCGaUGuCGU-CUuc-UGUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 62806 0.72 0.451831
Target:  5'- uGCCGGGCagGCGGgGGAgcuuucAGGCcgACCGGGu -3'
miRNA:   3'- -CGGCUCGa-UGUCgUCU------UCUG--UGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 9914 0.72 0.442186
Target:  5'- uCCGGGCUGaccgaGGCGGugauuGugGCCGGGc -3'
miRNA:   3'- cGGCUCGAUg----UCGUCuu---CugUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 35416 0.72 0.432659
Target:  5'- cGCCGAGgaGC-GCGGGAGGCgauggucccGCCGGa -3'
miRNA:   3'- -CGGCUCgaUGuCGUCUUCUG---------UGGCCc -5'
19183 3' -54.8 NC_004684.1 + 6167 0.81 0.128845
Target:  5'- gGCC-AGCgUGCGGCGGuAGGCACCGGGc -3'
miRNA:   3'- -CGGcUCG-AUGUCGUCuUCUGUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 4504 0.77 0.237762
Target:  5'- cGCCGAGCUgGCGGCcaccguGGAC-CCGGGg -3'
miRNA:   3'- -CGGCUCGA-UGUCGucu---UCUGuGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 30495 0.76 0.269886
Target:  5'- cCCGAGCgUGgGGCGGcuGGCGCUGGGg -3'
miRNA:   3'- cGGCUCG-AUgUCGUCuuCUGUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 3102 0.74 0.372069
Target:  5'- uCCGAGCUguucgggcccaccuuGCAGgGGGAGgggccguACGCCGGGg -3'
miRNA:   3'- cGGCUCGA---------------UGUCgUCUUC-------UGUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 8145 0.74 0.378124
Target:  5'- uGCuCGGG-UGCAGCAGAucgucaaccAGAuCGCCGGGg -3'
miRNA:   3'- -CG-GCUCgAUGUCGUCU---------UCU-GUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 48945 0.73 0.386888
Target:  5'- cGCCGAacgGCacguCGGCGGGcggGGugGCCGGGg -3'
miRNA:   3'- -CGGCU---CGau--GUCGUCU---UCugUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 25816 0.73 0.395785
Target:  5'- gGCCGGGUgGCGGcCAGAAcGGCAUCGGcGg -3'
miRNA:   3'- -CGGCUCGaUGUC-GUCUU-CUGUGGCC-C- -5'
19183 3' -54.8 NC_004684.1 + 6477 0.73 0.423252
Target:  5'- aGCUGGGCgGCGGUGGuguucGACAUCGGGu -3'
miRNA:   3'- -CGGCUCGaUGUCGUCuu---CUGUGGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.