Results 41 - 60 of 113 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19183 | 3' | -54.8 | NC_004684.1 | + | 14131 | 0.67 | 0.735832 |
Target: 5'- aGCCGAug-ACAcCGGAGcGCGCCGGGa -3' miRNA: 3'- -CGGCUcgaUGUcGUCUUcUGUGGCCC- -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 53359 | 0.67 | 0.735832 |
Target: 5'- gGCCGGG-UACAGCAGGAcguuGACcgaGuuGGGc -3' miRNA: 3'- -CGGCUCgAUGUCGUCUU----CUG---UggCCC- -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 59440 | 0.67 | 0.735832 |
Target: 5'- gGUgGAGCUGCccauggccuuGCGGAAGGCcuuGCCuGGGu -3' miRNA: 3'- -CGgCUCGAUGu---------CGUCUUCUG---UGG-CCC- -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 1813 | 0.67 | 0.729603 |
Target: 5'- cGCCGgugucaucGGcCUGCucGCAGAAGAacaucagcggaccaaCGCCGGGc -3' miRNA: 3'- -CGGC--------UC-GAUGu-CGUCUUCU---------------GUGGCCC- -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 64939 | 0.67 | 0.72543 |
Target: 5'- cGCCGAGCUGgccgcccaGGCGGgcGAugucggccuuguCGCCGGu -3' miRNA: 3'- -CGGCUCGAUg-------UCGUCuuCU------------GUGGCCc -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 56192 | 0.67 | 0.72543 |
Target: 5'- aUCGAGCgccCGGUGGAugAGACGCUGuGGg -3' miRNA: 3'- cGGCUCGau-GUCGUCU--UCUGUGGC-CC- -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 6835 | 0.67 | 0.72543 |
Target: 5'- aGCUGGcCUACGGCgcgaaGGgcGACGCCGuGGu -3' miRNA: 3'- -CGGCUcGAUGUCG-----UCuuCUGUGGC-CC- -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 9198 | 0.67 | 0.72543 |
Target: 5'- gGuuGGGC-GCAGUGGGcgcGugACCGGGu -3' miRNA: 3'- -CggCUCGaUGUCGUCUu--CugUGGCCC- -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 24839 | 0.67 | 0.72543 |
Target: 5'- --aGGGCgGCAGCGGuAGcgcCACCGGGc -3' miRNA: 3'- cggCUCGaUGUCGUCuUCu--GUGGCCC- -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 7633 | 0.68 | 0.714938 |
Target: 5'- aGCC-AGCUcGCcguGGCGGGcguGGugACCGGGu -3' miRNA: 3'- -CGGcUCGA-UG---UCGUCU---UCugUGGCCC- -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 27848 | 0.68 | 0.714938 |
Target: 5'- aCCGAGCgcgcugUGCAcGCAGGAG-UGCCGGu -3' miRNA: 3'- cGGCUCG------AUGU-CGUCUUCuGUGGCCc -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 54221 | 0.68 | 0.704367 |
Target: 5'- gGCCGAGgUcggcCAGCAGcuGuuccagggcaccGCGCCGGGa -3' miRNA: 3'- -CGGCUCgAu---GUCGUCuuC------------UGUGGCCC- -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 35173 | 0.68 | 0.693728 |
Target: 5'- gGCCGAGCcggaaccgggugUGCAGUGGAacuGGGUGCCGGu -3' miRNA: 3'- -CGGCUCG------------AUGUCGUCU---UCUGUGGCCc -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 4387 | 0.68 | 0.693728 |
Target: 5'- gGCCGAGCUGgucuaucgcgcCAGCaAGuccuGGcCGCCGGa -3' miRNA: 3'- -CGGCUCGAU-----------GUCG-UCu---UCuGUGGCCc -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 45593 | 0.68 | 0.692661 |
Target: 5'- cGCCGAccgucuuGCUGguGUAGGucGGGuCAUCGGGa -3' miRNA: 3'- -CGGCU-------CGAUguCGUCU--UCU-GUGGCCC- -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 47081 | 0.68 | 0.683031 |
Target: 5'- uGCCaGGGCaccagaACGGCGGugccGGGACGCgGGGg -3' miRNA: 3'- -CGG-CUCGa-----UGUCGUC----UUCUGUGgCCC- -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 53157 | 0.68 | 0.683031 |
Target: 5'- aCCGGGUc-CGGCGuGAAGGCcuCCGGGg -3' miRNA: 3'- cGGCUCGauGUCGU-CUUCUGu-GGCCC- -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 43940 | 0.68 | 0.672287 |
Target: 5'- uGUCGGGCauggaggcCAGCAGAucGGccaccgugcgcaGCACCGGGa -3' miRNA: 3'- -CGGCUCGau------GUCGUCU--UC------------UGUGGCCC- -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 15778 | 0.68 | 0.661506 |
Target: 5'- cGCCGAGC-GCGGCcaAGGAaCACCuGGa -3' miRNA: 3'- -CGGCUCGaUGUCGucUUCU-GUGGcCC- -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 11455 | 0.69 | 0.650699 |
Target: 5'- gGCCGAcGCgcaccACGGUcaccGAGGACGgCCGGGu -3' miRNA: 3'- -CGGCU-CGa----UGUCGu---CUUCUGU-GGCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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