miRNA display CGI


Results 21 - 40 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19183 3' -54.8 NC_004684.1 + 8970 0.7 0.585839
Target:  5'- gGCCGgaGGCaACGGCGGGGuuccGGCGgCCGGGc -3'
miRNA:   3'- -CGGC--UCGaUGUCGUCUU----CUGU-GGCCC- -5'
19183 3' -54.8 NC_004684.1 + 9198 0.67 0.72543
Target:  5'- gGuuGGGC-GCAGUGGGcgcGugACCGGGu -3'
miRNA:   3'- -CggCUCGaUGUCGUCUu--CugUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 9320 0.66 0.814502
Target:  5'- cGCCGAGgaACAGgAcGggGACGaggaggccuCCGGu -3'
miRNA:   3'- -CGGCUCgaUGUCgU-CuuCUGU---------GGCCc -5'
19183 3' -54.8 NC_004684.1 + 9914 0.72 0.442186
Target:  5'- uCCGGGCUGaccgaGGCGGugauuGugGCCGGGc -3'
miRNA:   3'- cGGCUCGAUg----UCGUCuu---CugUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 11455 0.69 0.650699
Target:  5'- gGCCGAcGCgcaccACGGUcaccGAGGACGgCCGGGu -3'
miRNA:   3'- -CGGCU-CGa----UGUCGu---CUUCUGU-GGCCC- -5'
19183 3' -54.8 NC_004684.1 + 12968 0.69 0.607401
Target:  5'- cGCCGAcCgGCGGCAGGcaacaccgAG-CGCCGGGc -3'
miRNA:   3'- -CGGCUcGaUGUCGUCU--------UCuGUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 14131 0.67 0.735832
Target:  5'- aGCCGAug-ACAcCGGAGcGCGCCGGGa -3'
miRNA:   3'- -CGGCUcgaUGUcGUCUUcUGUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 14375 0.66 0.814502
Target:  5'- cGCCGA-CU--GGCuGAccGACACCGGGc -3'
miRNA:   3'- -CGGCUcGAugUCGuCUu-CUGUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 15154 0.69 0.629045
Target:  5'- cGCCGcuguGGCaccACGGCcuGAucGACGCCGGGg -3'
miRNA:   3'- -CGGC----UCGa--UGUCGu-CUu-CUGUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 15314 0.66 0.776321
Target:  5'- gGCCGguGGCaUGgAGCGGGcguucaAGGcCGCCGGGu -3'
miRNA:   3'- -CGGC--UCG-AUgUCGUCU------UCU-GUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 15521 0.67 0.766389
Target:  5'- gGCCGAggccuuggagguGCUggaGguGCAGGAGaucgcGCACUGGGu -3'
miRNA:   3'- -CGGCU------------CGA---UguCGUCUUC-----UGUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 15778 0.68 0.661506
Target:  5'- cGCCGAGC-GCGGCcaAGGAaCACCuGGa -3'
miRNA:   3'- -CGGCUCGaUGUCGucUUCU-GUGGcCC- -5'
19183 3' -54.8 NC_004684.1 + 15900 0.7 0.553797
Target:  5'- aGCCGcagGGCguccCGGCAGAGGccuacccgGCACCGGa -3'
miRNA:   3'- -CGGC---UCGau--GUCGUCUUC--------UGUGGCCc -5'
19183 3' -54.8 NC_004684.1 + 16374 0.66 0.814502
Target:  5'- uGCCG-GUggacCAGCAGGgcAGcUACCGGGc -3'
miRNA:   3'- -CGGCuCGau--GUCGUCU--UCuGUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 16537 0.66 0.823609
Target:  5'- cGCCGAGgUugAGCAcaucaugauGAcGcCACCGGa -3'
miRNA:   3'- -CGGCUCgAugUCGU---------CUuCuGUGGCCc -5'
19183 3' -54.8 NC_004684.1 + 18345 0.69 0.639875
Target:  5'- gGCCGAGcCUGCcgAGgAGGAGgagccuGCGCCGGu -3'
miRNA:   3'- -CGGCUC-GAUG--UCgUCUUC------UGUGGCCc -5'
19183 3' -54.8 NC_004684.1 + 18846 0.69 0.636626
Target:  5'- gGCCGAGgUGuggcaggagguCGGCAacuacaucauccgcGAGGGCAUCGGGu -3'
miRNA:   3'- -CGGCUCgAU-----------GUCGU--------------CUUCUGUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 19335 0.66 0.795743
Target:  5'- cGCCGuGGCcg-AGCGGGAGGCGCUGa- -3'
miRNA:   3'- -CGGC-UCGaugUCGUCUUCUGUGGCcc -5'
19183 3' -54.8 NC_004684.1 + 19536 0.67 0.746133
Target:  5'- cGCC-AGCUGCGGguG----CGCCGGGc -3'
miRNA:   3'- -CGGcUCGAUGUCguCuucuGUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 19605 0.69 0.650699
Target:  5'- gGCCGAGgUGCuGGCGGu-GACGCuCGGc -3'
miRNA:   3'- -CGGCUCgAUG-UCGUCuuCUGUG-GCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.