miRNA display CGI


Results 21 - 40 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19183 5' -63.8 NC_004684.1 + 23056 0.66 0.356286
Target:  5'- cGGCCUGGccaaGCUGGCCaaCCGGUUcgACg -3'
miRNA:   3'- -UCGGACCa---UGGCCGGagGGCCGG--UGa -5'
19183 5' -63.8 NC_004684.1 + 2072 0.66 0.325439
Target:  5'- uGCCUGGcGCUGGCCguggugcacagCgaGGCCGCc -3'
miRNA:   3'- uCGGACCaUGGCCGGa----------GggCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 2640 0.66 0.356286
Target:  5'- cGCCUGGcaccaGCuCGGCCagCagguCGGCCACa -3'
miRNA:   3'- uCGGACCa----UG-GCCGGa-Gg---GCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 54289 0.66 0.348385
Target:  5'- cGGCCgggGGUGCgcgcauCGGCC-CCCuuGGCgGCUg -3'
miRNA:   3'- -UCGGa--CCAUG------GCCGGaGGG--CCGgUGA- -5'
19183 5' -63.8 NC_004684.1 + 24764 0.66 0.348385
Target:  5'- uGGCa-GGgaagACCGGCa-CCgGGCCGCUg -3'
miRNA:   3'- -UCGgaCCa---UGGCCGgaGGgCCGGUGA- -5'
19183 5' -63.8 NC_004684.1 + 11604 0.66 0.34526
Target:  5'- cGCCUGGacgacggcaccgaGCUGGCCg-UCGGCCGCc -3'
miRNA:   3'- uCGGACCa------------UGGCCGGagGGCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 42323 0.66 0.34061
Target:  5'- aGGCCaccaacCCGGCCgcCCUGGCCACc -3'
miRNA:   3'- -UCGGaccau-GGCCGGa-GGGCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 13975 0.66 0.34061
Target:  5'- cAGUCgcgcGGcGCaGGCCagCCCGGCCACc -3'
miRNA:   3'- -UCGGa---CCaUGgCCGGa-GGGCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 9439 0.66 0.34061
Target:  5'- cGGCCaUGGUGgaGGCCcuggugUUCCGGgCGCUg -3'
miRNA:   3'- -UCGG-ACCAUggCCGG------AGGGCCgGUGA- -5'
19183 5' -63.8 NC_004684.1 + 19604 0.66 0.356286
Target:  5'- cGGCCgaGGUGCUGGCggugacgCUCGGCgACa -3'
miRNA:   3'- -UCGGa-CCAUGGCCGga-----GGGCCGgUGa -5'
19183 5' -63.8 NC_004684.1 + 28216 0.66 0.356286
Target:  5'- cAGCCUGcGcUACCuGGCCgcccaCCCGGagCACa -3'
miRNA:   3'- -UCGGAC-C-AUGG-CCGGa----GGGCCg-GUGa -5'
19183 5' -63.8 NC_004684.1 + 47424 0.67 0.303635
Target:  5'- -aCCUGGUGcuCCGGCaccaCCUGGUCGCg -3'
miRNA:   3'- ucGGACCAU--GGCCGga--GGGCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 5671 0.67 0.303635
Target:  5'- cAGCCgUGGUcggaGgUGGCCggggCCCGGCCu-- -3'
miRNA:   3'- -UCGG-ACCA----UgGCCGGa---GGGCCGGuga -5'
19183 5' -63.8 NC_004684.1 + 40377 0.67 0.276335
Target:  5'- gGGCCUcggcGGUGgCGGCCUUCggcaGGCCGg- -3'
miRNA:   3'- -UCGGA----CCAUgGCCGGAGGg---CCGGUga -5'
19183 5' -63.8 NC_004684.1 + 44543 0.67 0.276335
Target:  5'- aGGCCuugcUGGUcUUGGCCagCCCGGCCuGCa -3'
miRNA:   3'- -UCGG----ACCAuGGCCGGa-GGGCCGG-UGa -5'
19183 5' -63.8 NC_004684.1 + 12592 0.67 0.310776
Target:  5'- cAGCCagGGUcAUCGG-CUCCUGGCgCGCg -3'
miRNA:   3'- -UCGGa-CCA-UGGCCgGAGGGCCG-GUGa -5'
19183 5' -63.8 NC_004684.1 + 52291 0.67 0.289733
Target:  5'- cGGCaaGGU--CGGCCUCCagggCGGCCACc -3'
miRNA:   3'- -UCGgaCCAugGCCGGAGG----GCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 22848 0.67 0.276335
Target:  5'- cGGCCUGccgACCGGgUucgUCCgGGCCACc -3'
miRNA:   3'- -UCGGACca-UGGCCgG---AGGgCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 2889 0.67 0.296621
Target:  5'- uGCCUGGUGgCaGCCguUCCagaacgaGGCCACc -3'
miRNA:   3'- uCGGACCAUgGcCGG--AGGg------CCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 7895 0.67 0.302928
Target:  5'- cGCCcGGUGCUccguuggGGCCg-CUGGCCGCg -3'
miRNA:   3'- uCGGaCCAUGG-------CCGGagGGCCGGUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.