miRNA display CGI


Results 1 - 20 of 95 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19183 5' -63.8 NC_004684.1 + 60292 0.66 0.332961
Target:  5'- uGGCCcGGUccucGgCGGCCUCCagGGCCuCg -3'
miRNA:   3'- -UCGGaCCA----UgGCCGGAGGg-CCGGuGa -5'
19183 5' -63.8 NC_004684.1 + 19922 0.66 0.323207
Target:  5'- uGGaCCUGGgauacACCGGCCUaaccgagguggauaCCUgcuGGCCGCg -3'
miRNA:   3'- -UC-GGACCa----UGGCCGGA--------------GGG---CCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 62533 0.66 0.332203
Target:  5'- cAGCCUGGUcGCUGGCCagcagcucgUCCagcuuggccuuguCGGCCGg- -3'
miRNA:   3'- -UCGGACCA-UGGCCGG---------AGG-------------GCCGGUga -5'
19183 5' -63.8 NC_004684.1 + 40656 0.66 0.332961
Target:  5'- gGGCCUGGccccGCCaGUCgcgCUCGGCCAg- -3'
miRNA:   3'- -UCGGACCa---UGGcCGGa--GGGCCGGUga -5'
19183 5' -63.8 NC_004684.1 + 19604 0.66 0.356286
Target:  5'- cGGCCgaGGUGCUGGCggugacgCUCGGCgACa -3'
miRNA:   3'- -UCGGa-CCAUGGCCGga-----GGGCCGgUGa -5'
19183 5' -63.8 NC_004684.1 + 18408 0.66 0.356286
Target:  5'- cGGCCagcagGGcACCGacgcGCCcgcCCCGGCCACc -3'
miRNA:   3'- -UCGGa----CCaUGGC----CGGa--GGGCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 2072 0.66 0.325439
Target:  5'- uGCCUGGcGCUGGCCguggugcacagCgaGGCCGCc -3'
miRNA:   3'- uCGGACCaUGGCCGGa----------GggCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 58395 0.66 0.332961
Target:  5'- cGCgUGGa---GGCCUuggCCCGGCCGCc -3'
miRNA:   3'- uCGgACCauggCCGGA---GGGCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 9439 0.66 0.34061
Target:  5'- cGGCCaUGGUGgaGGCCcuggugUUCCGGgCGCUg -3'
miRNA:   3'- -UCGG-ACCAUggCCGG------AGGGCCgGUGA- -5'
19183 5' -63.8 NC_004684.1 + 60594 0.66 0.318044
Target:  5'- cGCCgcgcacGGUGCgcaGGCCggucaCCCGGCgCACg -3'
miRNA:   3'- uCGGa-----CCAUGg--CCGGa----GGGCCG-GUGa -5'
19183 5' -63.8 NC_004684.1 + 27348 0.66 0.318044
Target:  5'- cGCCgugGGcACCGGCaugaugCCCaaGGCCACc -3'
miRNA:   3'- uCGGa--CCaUGGCCGga----GGG--CCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 28216 0.66 0.356286
Target:  5'- cAGCCUGcGcUACCuGGCCgcccaCCCGGagCACa -3'
miRNA:   3'- -UCGGAC-C-AUGG-CCGGa----GGGCCg-GUGa -5'
19183 5' -63.8 NC_004684.1 + 42323 0.66 0.34061
Target:  5'- aGGCCaccaacCCGGCCgcCCUGGCCACc -3'
miRNA:   3'- -UCGGaccau-GGCCGGa-GGGCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 67368 0.66 0.348385
Target:  5'- -cCCUGGUACC-GCC-CCCGGuguccggcuCCACg -3'
miRNA:   3'- ucGGACCAUGGcCGGaGGGCC---------GGUGa -5'
19183 5' -63.8 NC_004684.1 + 54289 0.66 0.348385
Target:  5'- cGGCCgggGGUGCgcgcauCGGCC-CCCuuGGCgGCUg -3'
miRNA:   3'- -UCGGa--CCAUG------GCCGGaGGG--CCGgUGA- -5'
19183 5' -63.8 NC_004684.1 + 23056 0.66 0.356286
Target:  5'- cGGCCUGGccaaGCUGGCCaaCCGGUUcgACg -3'
miRNA:   3'- -UCGGACCa---UGGCCGGagGGCCGG--UGa -5'
19183 5' -63.8 NC_004684.1 + 66904 0.66 0.348385
Target:  5'- cGGCCUucgGCgCGGCCUUggCGGCCACa -3'
miRNA:   3'- -UCGGAccaUG-GCCGGAGg-GCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 24764 0.66 0.348385
Target:  5'- uGGCa-GGgaagACCGGCa-CCgGGCCGCUg -3'
miRNA:   3'- -UCGgaCCa---UGGCCGgaGGgCCGGUGA- -5'
19183 5' -63.8 NC_004684.1 + 11604 0.66 0.34526
Target:  5'- cGCCUGGacgacggcaccgaGCUGGCCg-UCGGCCGCc -3'
miRNA:   3'- uCGGACCa------------UGGCCGGagGGCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 26263 0.66 0.359482
Target:  5'- gGGCCUGGaa--GGCCUCaaggauucggugaccUCGGCCAUc -3'
miRNA:   3'- -UCGGACCauggCCGGAG---------------GGCCGGUGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.