miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19183 5' -63.8 NC_004684.1 + 473 0.68 0.239113
Target:  5'- cGCCgaGGUugUGGCCgCCaaGGCCGCg -3'
miRNA:   3'- uCGGa-CCAugGCCGGaGGg-CCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 721 0.68 0.239113
Target:  5'- aAGaCCUGGgcaccGCCGGUgaCCgGGCCGCc -3'
miRNA:   3'- -UC-GGACCa----UGGCCGgaGGgCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 1237 0.71 0.148083
Target:  5'- cGGCCUGGU--CGGUCgCCCGGCCcCg -3'
miRNA:   3'- -UCGGACCAugGCCGGaGGGCCGGuGa -5'
19183 5' -63.8 NC_004684.1 + 1934 0.76 0.064898
Target:  5'- gGGCCUGGUACCGGCg-CacggUGGCCGCg -3'
miRNA:   3'- -UCGGACCAUGGCCGgaGg---GCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 2072 0.66 0.325439
Target:  5'- uGCCUGGcGCUGGCCguggugcacagCgaGGCCGCc -3'
miRNA:   3'- uCGGACCaUGGCCGGa----------GggCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 2640 0.66 0.356286
Target:  5'- cGCCUGGcaccaGCuCGGCCagCagguCGGCCACa -3'
miRNA:   3'- uCGGACCa----UG-GCCGGa-Gg---GCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 2889 0.67 0.296621
Target:  5'- uGCCUGGUGgCaGCCguUCCagaacgaGGCCACc -3'
miRNA:   3'- uCGGACCAUgGcCGG--AGGg------CCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 4464 0.68 0.251032
Target:  5'- cGCgCUGGUcggcuucgucACCGGCCagggCCUGGCC-Cg -3'
miRNA:   3'- uCG-GACCA----------UGGCCGGa---GGGCCGGuGa -5'
19183 5' -63.8 NC_004684.1 + 4897 0.73 0.111012
Target:  5'- cGGCCUGGUcgccACCGGCCU--CGGCgGCa -3'
miRNA:   3'- -UCGGACCA----UGGCCGGAggGCCGgUGa -5'
19183 5' -63.8 NC_004684.1 + 5671 0.67 0.303635
Target:  5'- cAGCCgUGGUcggaGgUGGCCggggCCCGGCCu-- -3'
miRNA:   3'- -UCGG-ACCA----UgGCCGGa---GGGCCGGuga -5'
19183 5' -63.8 NC_004684.1 + 5960 0.7 0.181334
Target:  5'- uGGCCgcgccGGUgagcgACCGGCCgagcaagUCCCGGCCugGCUc -3'
miRNA:   3'- -UCGGa----CCA-----UGGCCGG-------AGGGCCGG--UGA- -5'
19183 5' -63.8 NC_004684.1 + 7309 0.68 0.257173
Target:  5'- uGGCCcGGUgaaggcccgcACgGGCCgCCgGGCCGCg -3'
miRNA:   3'- -UCGGaCCA----------UGgCCGGaGGgCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 7895 0.67 0.302928
Target:  5'- cGCCcGGUGCUccguuggGGCCg-CUGGCCGCg -3'
miRNA:   3'- uCGGaCCAUGG-------CCGGagGGCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 9439 0.66 0.34061
Target:  5'- cGGCCaUGGUGgaGGCCcuggugUUCCGGgCGCUg -3'
miRNA:   3'- -UCGG-ACCAUggCCGG------AGGGCCgGUGA- -5'
19183 5' -63.8 NC_004684.1 + 10649 0.71 0.164163
Target:  5'- uGGUCUGGUGCCGG-UUCCCGuGCUggcGCg -3'
miRNA:   3'- -UCGGACCAUGGCCgGAGGGC-CGG---UGa -5'
19183 5' -63.8 NC_004684.1 + 11604 0.66 0.34526
Target:  5'- cGCCUGGacgacggcaccgaGCUGGCCg-UCGGCCGCc -3'
miRNA:   3'- uCGGACCa------------UGGCCGGagGGCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 11814 0.77 0.055117
Target:  5'- cGCCuUGGUGCCuGGaCC-CCCGGCCACc -3'
miRNA:   3'- uCGG-ACCAUGG-CC-GGaGGGCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 12592 0.67 0.310776
Target:  5'- cAGCCagGGUcAUCGG-CUCCUGGCgCGCg -3'
miRNA:   3'- -UCGGa-CCA-UGGCCgGAGGGCCG-GUGa -5'
19183 5' -63.8 NC_004684.1 + 13975 0.66 0.34061
Target:  5'- cAGUCgcgcGGcGCaGGCCagCCCGGCCACc -3'
miRNA:   3'- -UCGGa---CCaUGgCCGGa-GGGCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 14853 0.66 0.348385
Target:  5'- -aCC-GGUGCCGGacaCCUCCUGGCUccACa -3'
miRNA:   3'- ucGGaCCAUGGCC---GGAGGGCCGG--UGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.