miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19183 5' -63.8 NC_004684.1 + 30060 1.06 0.000305
Target:  5'- gAGCCUGGUACCGGCCUCCCGGCCACUc -3'
miRNA:   3'- -UCGGACCAUGGCCGGAGGGCCGGUGA- -5'
19183 5' -63.8 NC_004684.1 + 63541 0.81 0.027702
Target:  5'- gGGCgUGGcGCuCGGCCUCCuCGGCCGCUg -3'
miRNA:   3'- -UCGgACCaUG-GCCGGAGG-GCCGGUGA- -5'
19183 5' -63.8 NC_004684.1 + 11814 0.77 0.055117
Target:  5'- cGCCuUGGUGCCuGGaCC-CCCGGCCACc -3'
miRNA:   3'- uCGG-ACCAUGG-CC-GGaGGGCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 16460 0.76 0.061465
Target:  5'- cGCCUGGacgagGCCGGgCUgUCCGGCCACg -3'
miRNA:   3'- uCGGACCa----UGGCCgGA-GGGCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 1934 0.76 0.064898
Target:  5'- gGGCCUGGUACCGGCg-CacggUGGCCGCg -3'
miRNA:   3'- -UCGGACCAUGGCCGgaGg---GCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 17352 0.75 0.076344
Target:  5'- uGGCCUGGaGCCaGGCa--CCGGCCACg -3'
miRNA:   3'- -UCGGACCaUGG-CCGgagGGCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 42626 0.75 0.085024
Target:  5'- cGGCCcGGUGCCGGuCUUCCCuGCCAg- -3'
miRNA:   3'- -UCGGaCCAUGGCC-GGAGGGcCGGUga -5'
19183 5' -63.8 NC_004684.1 + 61702 0.74 0.0972
Target:  5'- uGCCgUGGgcagGCCGGgC-CCCGGCCACc -3'
miRNA:   3'- uCGG-ACCa---UGGCCgGaGGGCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 65965 0.73 0.105279
Target:  5'- cGGCCUGG-ACCuuggcccggcaGGCCUCCaGGUCGCUg -3'
miRNA:   3'- -UCGGACCaUGG-----------CCGGAGGgCCGGUGA- -5'
19183 5' -63.8 NC_004684.1 + 66621 0.73 0.10811
Target:  5'- cAGCUUGGUGCCugcGGCCUUggUGGCCACg -3'
miRNA:   3'- -UCGGACCAUGG---CCGGAGg-GCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 4897 0.73 0.111012
Target:  5'- cGGCCUGGUcgccACCGGCCU--CGGCgGCa -3'
miRNA:   3'- -UCGGACCA----UGGCCGGAggGCCGgUGa -5'
19183 5' -63.8 NC_004684.1 + 45232 0.73 0.117035
Target:  5'- cGCUUGGUGCUGGUCaggCCCGGCagccaGCg -3'
miRNA:   3'- uCGGACCAUGGCCGGa--GGGCCGg----UGa -5'
19183 5' -63.8 NC_004684.1 + 48519 0.73 0.117035
Target:  5'- cGCgCUGGUGCCcugagugcGGCCaCCCGGUCACc -3'
miRNA:   3'- uCG-GACCAUGG--------CCGGaGGGCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 57821 0.72 0.123363
Target:  5'- cGGCCUGGUcCCGGCggUgCUGGCCGCc -3'
miRNA:   3'- -UCGGACCAuGGCCGg-AgGGCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 46566 0.72 0.126644
Target:  5'- cGCUUGGUGCCGGaUUCCCaGUCGCg -3'
miRNA:   3'- uCGGACCAUGGCCgGAGGGcCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 39287 0.72 0.127979
Target:  5'- aGGCCUcgaaccgcaccacccGGUGCgGGUCgcgcggcggCCCGGCCACa -3'
miRNA:   3'- -UCGGA---------------CCAUGgCCGGa--------GGGCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 25766 0.71 0.144293
Target:  5'- cGGCCUGGcguCCGGCUcCaCCGGCgGCa -3'
miRNA:   3'- -UCGGACCau-GGCCGGaG-GGCCGgUGa -5'
19183 5' -63.8 NC_004684.1 + 19551 0.71 0.144293
Target:  5'- cGCCgggcGGUGCCaGGUCUCCgGGCCugGCg -3'
miRNA:   3'- uCGGa---CCAUGG-CCGGAGGgCCGG--UGa -5'
19183 5' -63.8 NC_004684.1 + 25261 0.71 0.144293
Target:  5'- aGGCgCUGGagaaGCUgcgcaccaagGGCCUUCCGGCCACa -3'
miRNA:   3'- -UCG-GACCa---UGG----------CCGGAGGGCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 35096 0.71 0.148083
Target:  5'- cAGCCgucGGUGCCGGUCaccUCCGGUUACUu -3'
miRNA:   3'- -UCGGa--CCAUGGCCGGa--GGGCCGGUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.