miRNA display CGI


Results 41 - 60 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19183 5' -63.8 NC_004684.1 + 22848 0.67 0.276335
Target:  5'- cGGCCUGccgACCGGgUucgUCCgGGCCACc -3'
miRNA:   3'- -UCGGACca-UGGCCgG---AGGgCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 44543 0.67 0.276335
Target:  5'- aGGCCuugcUGGUcUUGGCCagCCCGGCCuGCa -3'
miRNA:   3'- -UCGG----ACCAuGGCCGGa-GGGCCGG-UGa -5'
19183 5' -63.8 NC_004684.1 + 40377 0.67 0.276335
Target:  5'- gGGCCUcggcGGUGgCGGCCUUCggcaGGCCGg- -3'
miRNA:   3'- -UCGGA----CCAUgGCCGGAGGg---CCGGUga -5'
19183 5' -63.8 NC_004684.1 + 26446 0.68 0.269824
Target:  5'- uGGCCcGGUguacGgCGGCacgCCUGGCCGCg -3'
miRNA:   3'- -UCGGaCCA----UgGCCGga-GGGCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 61522 0.68 0.263437
Target:  5'- cAGgCUGGUGcugcCCGGCCUgCCaGUCGCa -3'
miRNA:   3'- -UCgGACCAU----GGCCGGAgGGcCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 60079 0.68 0.263437
Target:  5'- cGGCCc-GUGCgGGCCUucaCCgGGCCACc -3'
miRNA:   3'- -UCGGacCAUGgCCGGA---GGgCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 25201 0.68 0.263437
Target:  5'- aGGCgCUGGcACCggguGGCUUCaCCGGCaCGCUg -3'
miRNA:   3'- -UCG-GACCaUGG----CCGGAG-GGCCG-GUGA- -5'
19183 5' -63.8 NC_004684.1 + 53728 0.68 0.263437
Target:  5'- cGGCaUGGUGCCGGgUUCgaCGGCCAg- -3'
miRNA:   3'- -UCGgACCAUGGCCgGAGg-GCCGGUga -5'
19183 5' -63.8 NC_004684.1 + 18728 0.68 0.257173
Target:  5'- uGCCcGGUGaaGGCCUCuCCGG-CGCg -3'
miRNA:   3'- uCGGaCCAUggCCGGAG-GGCCgGUGa -5'
19183 5' -63.8 NC_004684.1 + 7309 0.68 0.257173
Target:  5'- uGGCCcGGUgaaggcccgcACgGGCCgCCgGGCCGCg -3'
miRNA:   3'- -UCGGaCCA----------UGgCCGGaGGgCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 4464 0.68 0.251032
Target:  5'- cGCgCUGGUcggcuucgucACCGGCCagggCCUGGCC-Cg -3'
miRNA:   3'- uCG-GACCA----------UGGCCGGa---GGGCCGGuGa -5'
19183 5' -63.8 NC_004684.1 + 20336 0.68 0.251032
Target:  5'- gGGCCgGGcaUGUCGGCCUCCggguggggCGGCUACUg -3'
miRNA:   3'- -UCGGaCC--AUGGCCGGAGG--------GCCGGUGA- -5'
19183 5' -63.8 NC_004684.1 + 21791 0.68 0.251032
Target:  5'- cGCgCUGGUGCUGGaCCUgUCCGGCUcCa -3'
miRNA:   3'- uCG-GACCAUGGCC-GGA-GGGCCGGuGa -5'
19183 5' -63.8 NC_004684.1 + 22275 0.68 0.251032
Target:  5'- cGCCUGGcGgCGGCCaaggCCCGcGCgGCg -3'
miRNA:   3'- uCGGACCaUgGCCGGa---GGGC-CGgUGa -5'
19183 5' -63.8 NC_004684.1 + 66833 0.68 0.245012
Target:  5'- cGGCCUuguccuccucGGUGgCGGCCUcgaccgCCUGGCCAg- -3'
miRNA:   3'- -UCGGA----------CCAUgGCCGGA------GGGCCGGUga -5'
19183 5' -63.8 NC_004684.1 + 473 0.68 0.239113
Target:  5'- cGCCgaGGUugUGGCCgCCaaGGCCGCg -3'
miRNA:   3'- uCGGa-CCAugGCCGGaGGg-CCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 721 0.68 0.239113
Target:  5'- aAGaCCUGGgcaccGCCGGUgaCCgGGCCGCc -3'
miRNA:   3'- -UC-GGACCa----UGGCCGgaGGgCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 59472 0.69 0.222124
Target:  5'- uGCCUGGguucuccACCGGCUggCUggCGGCCACc -3'
miRNA:   3'- uCGGACCa------UGGCCGGa-GG--GCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 25448 0.69 0.222124
Target:  5'- aGGCCguUGGUGCCGccguugaccGCCUUggucaCGGCCACg -3'
miRNA:   3'- -UCGG--ACCAUGGC---------CGGAGg----GCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 23677 0.69 0.221576
Target:  5'- cGGCCUGGUcgGCCcggaccagagcguGGCCUCCaaccugggCGGCgGCg -3'
miRNA:   3'- -UCGGACCA--UGG-------------CCGGAGG--------GCCGgUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.