miRNA display CGI


Results 21 - 40 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19183 5' -63.8 NC_004684.1 + 15299 0.66 0.335243
Target:  5'- gGGCCUGGUcgacgugGCCGGUggcauggagcgggcgUUCaaGGCCGCc -3'
miRNA:   3'- -UCGGACCA-------UGGCCG---------------GAGggCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 16460 0.76 0.061465
Target:  5'- cGCCUGGacgagGCCGGgCUgUCCGGCCACg -3'
miRNA:   3'- uCGGACCa----UGGCCgGA-GGGCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 17352 0.75 0.076344
Target:  5'- uGGCCUGGaGCCaGGCa--CCGGCCACg -3'
miRNA:   3'- -UCGGACCaUGG-CCGgagGGCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 18408 0.66 0.356286
Target:  5'- cGGCCagcagGGcACCGacgcGCCcgcCCCGGCCACc -3'
miRNA:   3'- -UCGGa----CCaUGGC----CGGa--GGGCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 18728 0.68 0.257173
Target:  5'- uGCCcGGUGaaGGCCUCuCCGG-CGCg -3'
miRNA:   3'- uCGGaCCAUggCCGGAG-GGCCgGUGa -5'
19183 5' -63.8 NC_004684.1 + 19551 0.71 0.144293
Target:  5'- cGCCgggcGGUGCCaGGUCUCCgGGCCugGCg -3'
miRNA:   3'- uCGGa---CCAUGG-CCGGAGGgCCGG--UGa -5'
19183 5' -63.8 NC_004684.1 + 19604 0.66 0.356286
Target:  5'- cGGCCgaGGUGCUGGCggugacgCUCGGCgACa -3'
miRNA:   3'- -UCGGa-CCAUGGCCGga-----GGGCCGgUGa -5'
19183 5' -63.8 NC_004684.1 + 19922 0.66 0.323207
Target:  5'- uGGaCCUGGgauacACCGGCCUaaccgagguggauaCCUgcuGGCCGCg -3'
miRNA:   3'- -UC-GGACCa----UGGCCGGA--------------GGG---CCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 20237 0.71 0.168421
Target:  5'- cGCCUGGcgcGCCGGUacuaCUUCCGGCCcgGCg -3'
miRNA:   3'- uCGGACCa--UGGCCG----GAGGGCCGG--UGa -5'
19183 5' -63.8 NC_004684.1 + 20336 0.68 0.251032
Target:  5'- gGGCCgGGcaUGUCGGCCUCCggguggggCGGCUACUg -3'
miRNA:   3'- -UCGGaCC--AUGGCCGGAGG--------GCCGGUGA- -5'
19183 5' -63.8 NC_004684.1 + 20976 0.7 0.195607
Target:  5'- cGCCgGGacaUGCUGGCCguggacccgaccaUCCCGGCCAg- -3'
miRNA:   3'- uCGGaCC---AUGGCCGG-------------AGGGCCGGUga -5'
19183 5' -63.8 NC_004684.1 + 21791 0.68 0.251032
Target:  5'- cGCgCUGGUGCUGGaCCUgUCCGGCUcCa -3'
miRNA:   3'- uCG-GACCAUGGCC-GGA-GGGCCGGuGa -5'
19183 5' -63.8 NC_004684.1 + 22275 0.68 0.251032
Target:  5'- cGCCUGGcGgCGGCCaaggCCCGcGCgGCg -3'
miRNA:   3'- uCGGACCaUgGCCGGa---GGGC-CGgUGa -5'
19183 5' -63.8 NC_004684.1 + 22848 0.67 0.276335
Target:  5'- cGGCCUGccgACCGGgUucgUCCgGGCCACc -3'
miRNA:   3'- -UCGGACca-UGGCCgG---AGGgCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 23002 0.7 0.193162
Target:  5'- cGGCCUGGgccgACUGGCCgccgucggcagcgauUUCCuGCCACg -3'
miRNA:   3'- -UCGGACCa---UGGCCGG---------------AGGGcCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 23056 0.66 0.356286
Target:  5'- cGGCCUGGccaaGCUGGCCaaCCGGUUcgACg -3'
miRNA:   3'- -UCGGACCa---UGGCCGGagGGCCGG--UGa -5'
19183 5' -63.8 NC_004684.1 + 23563 0.7 0.181794
Target:  5'- cGGCCUGG-ACa-GCCUgCCgGGCCGCg -3'
miRNA:   3'- -UCGGACCaUGgcCGGA-GGgCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 23677 0.69 0.221576
Target:  5'- cGGCCUGGUcgGCCcggaccagagcguGGCCUCCaaccugggCGGCgGCg -3'
miRNA:   3'- -UCGGACCA--UGG-------------CCGGAGG--------GCCGgUGa -5'
19183 5' -63.8 NC_004684.1 + 24420 0.66 0.34061
Target:  5'- gGGCgUuGUACUuGUCUcCCCGGCCACa -3'
miRNA:   3'- -UCGgAcCAUGGcCGGA-GGGCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 24540 0.67 0.282971
Target:  5'- cGGCg-GuGUGCCgGGCCgcgauagcgUCCCGGCCAUg -3'
miRNA:   3'- -UCGgaC-CAUGG-CCGG---------AGGGCCGGUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.