Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19200 | 3' | -58.1 | NC_004684.1 | + | 35128 | 1.06 | 0.000869 |
Target: 5'- cAACAGCCAGCUCGGCUCUGCCAUCGAc -3' miRNA: 3'- -UUGUCGGUCGAGCCGAGACGGUAGCU- -5' |
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19200 | 3' | -58.1 | NC_004684.1 | + | 55781 | 0.79 | 0.08628 |
Target: 5'- cGACGGCCAGCUCGGU---GCCGUCGu -3' miRNA: 3'- -UUGUCGGUCGAGCCGagaCGGUAGCu -5' |
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19200 | 3' | -58.1 | NC_004684.1 | + | 2459 | 0.79 | 0.091288 |
Target: 5'- gGGCGGCCAGCUCGGCg-UGCCGUa-- -3' miRNA: 3'- -UUGUCGGUCGAGCCGagACGGUAgcu -5' |
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19200 | 3' | -58.1 | NC_004684.1 | + | 36965 | 0.73 | 0.224291 |
Target: 5'- cGACGGCCAGUUCGGUUUcGCCGaCGc -3' miRNA: 3'- -UUGUCGGUCGAGCCGAGaCGGUaGCu -5' |
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19200 | 3' | -58.1 | NC_004684.1 | + | 44339 | 0.71 | 0.275125 |
Target: 5'- --uGGCCAGCUUGGCcagGCCGUCa- -3' miRNA: 3'- uugUCGGUCGAGCCGagaCGGUAGcu -5' |
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19200 | 3' | -58.1 | NC_004684.1 | + | 44390 | 0.71 | 0.289195 |
Target: 5'- cGGCGGCCAG-UCGGCcCagGCCGUUGAu -3' miRNA: 3'- -UUGUCGGUCgAGCCGaGa-CGGUAGCU- -5' |
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19200 | 3' | -58.1 | NC_004684.1 | + | 54958 | 0.71 | 0.303824 |
Target: 5'- cGCAGCCAGa-CGGUcgcucUCUGCgGUCGAa -3' miRNA: 3'- uUGUCGGUCgaGCCG-----AGACGgUAGCU- -5' |
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19200 | 3' | -58.1 | NC_004684.1 | + | 37387 | 0.71 | 0.30457 |
Target: 5'- -uCGGCCAGCUCgGGCaggucaucguucacgCUGuCCAUCGAc -3' miRNA: 3'- uuGUCGGUCGAG-CCGa--------------GAC-GGUAGCU- -5' |
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19200 | 3' | -58.1 | NC_004684.1 | + | 49197 | 0.71 | 0.311349 |
Target: 5'- cGGCGGCCuGCUCGG-UCgGCCAgUCGGu -3' miRNA: 3'- -UUGUCGGuCGAGCCgAGaCGGU-AGCU- -5' |
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19200 | 3' | -58.1 | NC_004684.1 | + | 56895 | 0.7 | 0.319015 |
Target: 5'- cGGCGGcCCAGUgcgUCGGCcgggUCuUGCCGUCGAu -3' miRNA: 3'- -UUGUC-GGUCG---AGCCG----AG-ACGGUAGCU- -5' |
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19200 | 3' | -58.1 | NC_004684.1 | + | 63552 | 0.7 | 0.334769 |
Target: 5'- -uCGGCCucCUCGGCcgCUGCCAUCa- -3' miRNA: 3'- uuGUCGGucGAGCCGa-GACGGUAGcu -5' |
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19200 | 3' | -58.1 | NC_004684.1 | + | 6225 | 0.7 | 0.359452 |
Target: 5'- -uCGGCCAGCUgGGCg--GCCAggccuUCGAc -3' miRNA: 3'- uuGUCGGUCGAgCCGagaCGGU-----AGCU- -5' |
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19200 | 3' | -58.1 | NC_004684.1 | + | 48927 | 0.7 | 0.359452 |
Target: 5'- cGACAGCacCAGCUCGGU---GCCGUCGu -3' miRNA: 3'- -UUGUCG--GUCGAGCCGagaCGGUAGCu -5' |
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19200 | 3' | -58.1 | NC_004684.1 | + | 355 | 0.69 | 0.367957 |
Target: 5'- cGCAG-CAGCUCGGUggccagGCCAUCGu -3' miRNA: 3'- uUGUCgGUCGAGCCGaga---CGGUAGCu -5' |
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19200 | 3' | -58.1 | NC_004684.1 | + | 61792 | 0.69 | 0.367957 |
Target: 5'- uGCGcGCCAGCUCGGCc---CCGUCGGc -3' miRNA: 3'- uUGU-CGGUCGAGCCGagacGGUAGCU- -5' |
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19200 | 3' | -58.1 | NC_004684.1 | + | 41441 | 0.69 | 0.373126 |
Target: 5'- --uGGCCAGCUCGGCguugggcaccuugUUGCCGauguUCGGc -3' miRNA: 3'- uugUCGGUCGAGCCGa------------GACGGU----AGCU- -5' |
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19200 | 3' | -58.1 | NC_004684.1 | + | 63010 | 0.69 | 0.375729 |
Target: 5'- cGAUAGaCCAGCUCGGC-CUccggggucgagaaGUCGUCGGa -3' miRNA: 3'- -UUGUC-GGUCGAGCCGaGA-------------CGGUAGCU- -5' |
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19200 | 3' | -58.1 | NC_004684.1 | + | 42671 | 0.69 | 0.41251 |
Target: 5'- cAGCAcGcCCAGCUCGGUgUUGUCGUCGc -3' miRNA: 3'- -UUGU-C-GGUCGAGCCGaGACGGUAGCu -5' |
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19200 | 3' | -58.1 | NC_004684.1 | + | 49126 | 0.69 | 0.41251 |
Target: 5'- aGGCGGCCGGg-CGuGCcgUUGCCGUCGAu -3' miRNA: 3'- -UUGUCGGUCgaGC-CGa-GACGGUAGCU- -5' |
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19200 | 3' | -58.1 | NC_004684.1 | + | 62894 | 0.68 | 0.418077 |
Target: 5'- uGGCcGCCAGCUCGGCgggguuacgguagCgGCCAaCGAc -3' miRNA: 3'- -UUGuCGGUCGAGCCGa------------GaCGGUaGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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