miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19200 3' -58.1 NC_004684.1 + 355 0.69 0.367957
Target:  5'- cGCAG-CAGCUCGGUggccagGCCAUCGu -3'
miRNA:   3'- uUGUCgGUCGAGCCGaga---CGGUAGCu -5'
19200 3' -58.1 NC_004684.1 + 2459 0.79 0.091288
Target:  5'- gGGCGGCCAGCUCGGCg-UGCCGUa-- -3'
miRNA:   3'- -UUGUCGGUCGAGCCGagACGGUAgcu -5'
19200 3' -58.1 NC_004684.1 + 6082 0.68 0.450461
Target:  5'- cGGCGGcCCGGCggCGGUgCUGCCGgaaaUCGAc -3'
miRNA:   3'- -UUGUC-GGUCGa-GCCGaGACGGU----AGCU- -5'
19200 3' -58.1 NC_004684.1 + 6225 0.7 0.359452
Target:  5'- -uCGGCCAGCUgGGCg--GCCAggccuUCGAc -3'
miRNA:   3'- uuGUCGGUCGAgCCGagaCGGU-----AGCU- -5'
19200 3' -58.1 NC_004684.1 + 8055 0.68 0.421813
Target:  5'- cAGC-GCCAGCagggugCGGCUCauugccagcGCCAUCGAc -3'
miRNA:   3'- -UUGuCGGUCGa-----GCCGAGa--------CGGUAGCU- -5'
19200 3' -58.1 NC_004684.1 + 9294 0.68 0.450461
Target:  5'- -cCGGCCAuGCUCGGCgcgCUcCCgGUCGAg -3'
miRNA:   3'- uuGUCGGU-CGAGCCGa--GAcGG-UAGCU- -5'
19200 3' -58.1 NC_004684.1 + 9448 0.66 0.563424
Target:  5'- cGCAGCgAGCaccgcaggcggUCGGCaaUGUCAUCGGc -3'
miRNA:   3'- uUGUCGgUCG-----------AGCCGagACGGUAGCU- -5'
19200 3' -58.1 NC_004684.1 + 13557 0.67 0.470143
Target:  5'- uGGCGGCCA--UCGGCUaCUG-CGUCGAg -3'
miRNA:   3'- -UUGUCGGUcgAGCCGA-GACgGUAGCU- -5'
19200 3' -58.1 NC_004684.1 + 25071 0.66 0.563424
Target:  5'- gGGCGGCCGGgUUGGUg--GCC-UCGAu -3'
miRNA:   3'- -UUGUCGGUCgAGCCGagaCGGuAGCU- -5'
19200 3' -58.1 NC_004684.1 + 25841 0.66 0.542144
Target:  5'- cGGCGGCCAgauGCUCGGCg--GCCuguUCa- -3'
miRNA:   3'- -UUGUCGGU---CGAGCCGagaCGGu--AGcu -5'
19200 3' -58.1 NC_004684.1 + 31747 0.66 0.552753
Target:  5'- cGACGGCCcuGUacgUCGGC-CUguacGCCAUCGAc -3'
miRNA:   3'- -UUGUCGGu-CG---AGCCGaGA----CGGUAGCU- -5'
19200 3' -58.1 NC_004684.1 + 32220 0.67 0.510754
Target:  5'- cACAcCCGGUUcCGGCUCgGCCAcCGAg -3'
miRNA:   3'- uUGUcGGUCGA-GCCGAGaCGGUaGCU- -5'
19200 3' -58.1 NC_004684.1 + 35128 1.06 0.000869
Target:  5'- cAACAGCCAGCUCGGCUCUGCCAUCGAc -3'
miRNA:   3'- -UUGUCGGUCGAGCCGAGACGGUAGCU- -5'
19200 3' -58.1 NC_004684.1 + 36965 0.73 0.224291
Target:  5'- cGACGGCCAGUUCGGUUUcGCCGaCGc -3'
miRNA:   3'- -UUGUCGGUCGAGCCGAGaCGGUaGCu -5'
19200 3' -58.1 NC_004684.1 + 37387 0.71 0.30457
Target:  5'- -uCGGCCAGCUCgGGCaggucaucguucacgCUGuCCAUCGAc -3'
miRNA:   3'- uuGUCGGUCGAG-CCGa--------------GAC-GGUAGCU- -5'
19200 3' -58.1 NC_004684.1 + 38550 0.66 0.584919
Target:  5'- uGACGGCCAGC-CaGUUC-GCCGcaaUCGAg -3'
miRNA:   3'- -UUGUCGGUCGaGcCGAGaCGGU---AGCU- -5'
19200 3' -58.1 NC_004684.1 + 39671 0.66 0.584919
Target:  5'- cGCGuGCCucguGCUCGcGCUCgGCCGcCGAg -3'
miRNA:   3'- uUGU-CGGu---CGAGC-CGAGaCGGUaGCU- -5'
19200 3' -58.1 NC_004684.1 + 41441 0.69 0.373126
Target:  5'- --uGGCCAGCUCGGCguugggcaccuugUUGCCGauguUCGGc -3'
miRNA:   3'- uugUCGGUCGAGCCGa------------GACGGU----AGCU- -5'
19200 3' -58.1 NC_004684.1 + 42671 0.69 0.41251
Target:  5'- cAGCAcGcCCAGCUCGGUgUUGUCGUCGc -3'
miRNA:   3'- -UUGU-C-GGUCGAGCCGaGACGGUAGCu -5'
19200 3' -58.1 NC_004684.1 + 43930 0.67 0.480146
Target:  5'- uGAUGGCgGGCaUUGGCUCccaggucucGCCGUCGAg -3'
miRNA:   3'- -UUGUCGgUCG-AGCCGAGa--------CGGUAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.