miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19202 3' -53.8 NC_004684.1 + 33086 0.71 0.580066
Target:  5'- uCUGUCCGGcguggcGCUGC-CGACGcaggCGCUcGCg -3'
miRNA:   3'- -GACAGGCU------UGACGcGUUGCa---GCGA-CG- -5'
19202 3' -53.8 NC_004684.1 + 34472 0.68 0.731713
Target:  5'- -gGUCaUGGuCUGUGCAGCGUCGCcgagGUc -3'
miRNA:   3'- gaCAG-GCUuGACGCGUUGCAGCGa---CG- -5'
19202 3' -53.8 NC_004684.1 + 35147 0.66 0.819919
Target:  5'- -gGUCCGAc--GCGCAguagaucGCGcCGCUGUc -3'
miRNA:   3'- gaCAGGCUugaCGCGU-------UGCaGCGACG- -5'
19202 3' -53.8 NC_004684.1 + 35480 1.13 0.000956
Target:  5'- aCUGUCCGAACUGCGCAACGUCGCUGCg -3'
miRNA:   3'- -GACAGGCUUGACGCGUUGCAGCGACG- -5'
19202 3' -53.8 NC_004684.1 + 36283 0.71 0.590921
Target:  5'- -gGUCCuccagcgcCUGCGCGGCGUC-CUGCc -3'
miRNA:   3'- gaCAGGcuu-----GACGCGUUGCAGcGACG- -5'
19202 3' -53.8 NC_004684.1 + 37082 0.67 0.811579
Target:  5'- cCUGUUCGcGgUGCGCGAU---GCUGCg -3'
miRNA:   3'- -GACAGGCuUgACGCGUUGcagCGACG- -5'
19202 3' -53.8 NC_004684.1 + 38230 0.67 0.772792
Target:  5'- -gGUUCGGgaacuGCUGCGCGGCGaa-CUGCg -3'
miRNA:   3'- gaCAGGCU-----UGACGCGUUGCagcGACG- -5'
19202 3' -53.8 NC_004684.1 + 41698 0.66 0.855813
Target:  5'- aUG-CC-AGCUGCGCcACGcgCGUUGCc -3'
miRNA:   3'- gACaGGcUUGACGCGuUGCa-GCGACG- -5'
19202 3' -53.8 NC_004684.1 + 42348 0.69 0.67823
Target:  5'- --uUCUgGAGCUGCGCcACGUCGaUGCc -3'
miRNA:   3'- gacAGG-CUUGACGCGuUGCAGCgACG- -5'
19202 3' -53.8 NC_004684.1 + 42781 0.66 0.855813
Target:  5'- cCUGgCCGcccaUGCGCGccACGUcCGCUGUc -3'
miRNA:   3'- -GACaGGCuug-ACGCGU--UGCA-GCGACG- -5'
19202 3' -53.8 NC_004684.1 + 43245 0.66 0.838754
Target:  5'- cCUGcaCCgGAGCggUGCGCAGCGgguacggcUGCUGCg -3'
miRNA:   3'- -GACa-GG-CUUG--ACGCGUUGCa-------GCGACG- -5'
19202 3' -53.8 NC_004684.1 + 43643 0.7 0.612725
Target:  5'- -gGcCCGAACUGCGCAccgagcaguGCGcCGCcaGCg -3'
miRNA:   3'- gaCaGGCUUGACGCGU---------UGCaGCGa-CG- -5'
19202 3' -53.8 NC_004684.1 + 48022 0.69 0.656458
Target:  5'- cCUGcUCCGGgaaccGCUGCGCGaucagGCGgCGCaUGCg -3'
miRNA:   3'- -GAC-AGGCU-----UGACGCGU-----UGCaGCG-ACG- -5'
19202 3' -53.8 NC_004684.1 + 50006 0.67 0.782731
Target:  5'- uCUGaCCGggUgUGCGCAcCGUCgGCgGCa -3'
miRNA:   3'- -GACaGGCuuG-ACGCGUuGCAG-CGaCG- -5'
19202 3' -53.8 NC_004684.1 + 50783 0.67 0.772792
Target:  5'- aUGUCCGcGCggucggUGCGCAACaugaaGUCGUcGCg -3'
miRNA:   3'- gACAGGCuUG------ACGCGUUG-----CAGCGaCG- -5'
19202 3' -53.8 NC_004684.1 + 51556 0.67 0.792516
Target:  5'- uUGU-CGcuCUGCGCcaguGCG-CGCUGCg -3'
miRNA:   3'- gACAgGCuuGACGCGu---UGCaGCGACG- -5'
19202 3' -53.8 NC_004684.1 + 54222 0.71 0.562789
Target:  5'- gCUGUCCuGGACcaggUGCGCGucacgcgucagcgacGCGaggCGCUGCg -3'
miRNA:   3'- -GACAGG-CUUG----ACGCGU---------------UGCa--GCGACG- -5'
19202 3' -53.8 NC_004684.1 + 54781 0.66 0.829898
Target:  5'- gUGcCCGcaAGgUGCGCGGCGUgGCggGCc -3'
miRNA:   3'- gACaGGC--UUgACGCGUUGCAgCGa-CG- -5'
19202 3' -53.8 NC_004684.1 + 56454 0.68 0.76271
Target:  5'- aUGUCgcggcUGAGCaUGCGCc-CGUCGCUGg -3'
miRNA:   3'- gACAG-----GCUUG-ACGCGuuGCAGCGACg -5'
19202 3' -53.8 NC_004684.1 + 57097 0.68 0.752495
Target:  5'- -gGUgCGGGCgaccucugGCGCGacaccgGCGUCGCUGg -3'
miRNA:   3'- gaCAgGCUUGa-------CGCGU------UGCAGCGACg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.