Results 1 - 20 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19202 | 3' | -53.8 | NC_004684.1 | + | 1762 | 0.69 | 0.699829 |
Target: 5'- ---aCCgGAGCUGCGCG-CGUgGCUGg -3' miRNA: 3'- gacaGG-CUUGACGCGUuGCAgCGACg -5' |
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19202 | 3' | -53.8 | NC_004684.1 | + | 5604 | 0.67 | 0.782731 |
Target: 5'- -cGgggCCGAGCUggcGCGCAugGU-GCUGg -3' miRNA: 3'- gaCa--GGCUUGA---CGCGUugCAgCGACg -5' |
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19202 | 3' | -53.8 | NC_004684.1 | + | 5822 | 0.71 | 0.547787 |
Target: 5'- -cGUCCcAGCUGCGCGAg--UGCUGCc -3' miRNA: 3'- gaCAGGcUUGACGCGUUgcaGCGACG- -5' |
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19202 | 3' | -53.8 | NC_004684.1 | + | 6794 | 0.69 | 0.67823 |
Target: 5'- gUGaCCGGcCUGCGCAcCGUgCGCgGCg -3' miRNA: 3'- gACaGGCUuGACGCGUuGCA-GCGaCG- -5' |
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19202 | 3' | -53.8 | NC_004684.1 | + | 7052 | 0.67 | 0.802135 |
Target: 5'- gCUGgCCGAAC-GCGCggUGaUCGC-GCu -3' miRNA: 3'- -GACaGGCUUGaCGCGuuGC-AGCGaCG- -5' |
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19202 | 3' | -53.8 | NC_004684.1 | + | 7377 | 0.74 | 0.416756 |
Target: 5'- --aUCCGAGCUGUGCugguggauGCGccCGCUGCu -3' miRNA: 3'- gacAGGCUUGACGCGu-------UGCa-GCGACG- -5' |
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19202 | 3' | -53.8 | NC_004684.1 | + | 8016 | 0.68 | 0.76271 |
Target: 5'- -gGUaggCGAGCUGCGUuauuACGUCgGCUGg -3' miRNA: 3'- gaCAg--GCUUGACGCGu---UGCAG-CGACg -5' |
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19202 | 3' | -53.8 | NC_004684.1 | + | 9644 | 0.66 | 0.829898 |
Target: 5'- cCUGaCCGcucACUGCGCAGCuGcCGCcuggGCg -3' miRNA: 3'- -GACaGGCu--UGACGCGUUG-CaGCGa---CG- -5' |
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19202 | 3' | -53.8 | NC_004684.1 | + | 11831 | 0.67 | 0.811579 |
Target: 5'- gCUGUCCGGcgACUgGCGCGACuUCG--GCa -3' miRNA: 3'- -GACAGGCU--UGA-CGCGUUGcAGCgaCG- -5' |
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19202 | 3' | -53.8 | NC_004684.1 | + | 12282 | 0.68 | 0.752495 |
Target: 5'- -gGcCCGuGCUGCGCAGCG-CGCcaacgGUg -3' miRNA: 3'- gaCaGGCuUGACGCGUUGCaGCGa----CG- -5' |
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19202 | 3' | -53.8 | NC_004684.1 | + | 13434 | 0.73 | 0.455154 |
Target: 5'- --aUCCGAACUGUGCggUGcUCaGCUGUg -3' miRNA: 3'- gacAGGCUUGACGCGuuGC-AG-CGACG- -5' |
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19202 | 3' | -53.8 | NC_004684.1 | + | 13778 | 0.66 | 0.855813 |
Target: 5'- gUGUCCGGGCcGCGCGugcucaagaGCGgCGCacUGUc -3' miRNA: 3'- gACAGGCUUGaCGCGU---------UGCaGCG--ACG- -5' |
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19202 | 3' | -53.8 | NC_004684.1 | + | 14738 | 0.68 | 0.742159 |
Target: 5'- -gGUCCGAGgaUGCGgGAcCGUCGCgGUu -3' miRNA: 3'- gaCAGGCUUg-ACGCgUU-GCAGCGaCG- -5' |
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19202 | 3' | -53.8 | NC_004684.1 | + | 14811 | 0.69 | 0.699829 |
Target: 5'- gCUGUccaCCGGACUGUGgGGCG-CGCcguggUGCg -3' miRNA: 3'- -GACA---GGCUUGACGCgUUGCaGCG-----ACG- -5' |
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19202 | 3' | -53.8 | NC_004684.1 | + | 15056 | 0.66 | 0.847395 |
Target: 5'- gCUGgaUCCGAuucgcuggcCUGCGCAccGCG-CaGCUGCg -3' miRNA: 3'- -GAC--AGGCUu--------GACGCGU--UGCaG-CGACG- -5' |
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19202 | 3' | -53.8 | NC_004684.1 | + | 23763 | 0.67 | 0.782731 |
Target: 5'- -aGUUCGGGCcgugggGCGCGGCGUUGg-GCg -3' miRNA: 3'- gaCAGGCUUGa-----CGCGUUGCAGCgaCG- -5' |
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19202 | 3' | -53.8 | NC_004684.1 | + | 25604 | 0.68 | 0.752495 |
Target: 5'- gUGggacgCCGGGCacaUGCGC-GCGaCGCUGCc -3' miRNA: 3'- gACa----GGCUUG---ACGCGuUGCaGCGACG- -5' |
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19202 | 3' | -53.8 | NC_004684.1 | + | 27841 | 0.69 | 0.66736 |
Target: 5'- gCUGggcaCCGAgcgcGCUGUGCAcgcaggaguGCcgGUCGCUGCu -3' miRNA: 3'- -GACa---GGCU----UGACGCGU---------UG--CAGCGACG- -5' |
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19202 | 3' | -53.8 | NC_004684.1 | + | 31394 | 0.69 | 0.671713 |
Target: 5'- uCUGUCCGGcgggcaccaccccgACUGUGCGccaggccugcguggaGUCGCUGUc -3' miRNA: 3'- -GACAGGCU--------------UGACGCGUug-------------CAGCGACG- -5' |
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19202 | 3' | -53.8 | NC_004684.1 | + | 31544 | 0.69 | 0.67823 |
Target: 5'- cCUGcCCgcGAACUGgacCGCgAGCGUCGCUGa -3' miRNA: 3'- -GACaGG--CUUGAC---GCG-UUGCAGCGACg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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