miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19202 3' -53.8 NC_004684.1 + 35480 1.13 0.000956
Target:  5'- aCUGUCCGAACUGCGCAACGUCGCUGCg -3'
miRNA:   3'- -GACAGGCUUGACGCGUUGCAGCGACG- -5'
19202 3' -53.8 NC_004684.1 + 59689 0.74 0.398313
Target:  5'- cCUGcgCCGAGCUGCGCGggguGCGggugCGCauccUGCg -3'
miRNA:   3'- -GACa-GGCUUGACGCGU----UGCa---GCG----ACG- -5'
19202 3' -53.8 NC_004684.1 + 7377 0.74 0.416756
Target:  5'- --aUCCGAGCUGUGCugguggauGCGccCGCUGCu -3'
miRNA:   3'- gacAGGCUUGACGCGu-------UGCa-GCGACG- -5'
19202 3' -53.8 NC_004684.1 + 13434 0.73 0.455154
Target:  5'- --aUCCGAACUGUGCggUGcUCaGCUGUg -3'
miRNA:   3'- gacAGGCUUGACGCGuuGC-AG-CGACG- -5'
19202 3' -53.8 NC_004684.1 + 5822 0.71 0.547787
Target:  5'- -cGUCCcAGCUGCGCGAg--UGCUGCc -3'
miRNA:   3'- gaCAGGcUUGACGCGUUgcaGCGACG- -5'
19202 3' -53.8 NC_004684.1 + 62585 0.71 0.558491
Target:  5'- uUGUCCucGAuCUGCGCGccggucaugGCGUCGC-GCa -3'
miRNA:   3'- gACAGG--CUuGACGCGU---------UGCAGCGaCG- -5'
19202 3' -53.8 NC_004684.1 + 63512 0.71 0.558491
Target:  5'- aUGUCUGAccaggccuuggcACUGCGCAGCGgCG-UGCc -3'
miRNA:   3'- gACAGGCU------------UGACGCGUUGCaGCgACG- -5'
19202 3' -53.8 NC_004684.1 + 54222 0.71 0.562789
Target:  5'- gCUGUCCuGGACcaggUGCGCGucacgcgucagcgacGCGaggCGCUGCg -3'
miRNA:   3'- -GACAGG-CUUG----ACGCGU---------------UGCa--GCGACG- -5'
19202 3' -53.8 NC_004684.1 + 33086 0.71 0.580066
Target:  5'- uCUGUCCGGcguggcGCUGC-CGACGcaggCGCUcGCg -3'
miRNA:   3'- -GACAGGCU------UGACGcGUUGCa---GCGA-CG- -5'
19202 3' -53.8 NC_004684.1 + 36283 0.71 0.590921
Target:  5'- -gGUCCuccagcgcCUGCGCGGCGUC-CUGCc -3'
miRNA:   3'- gaCAGGcuu-----GACGCGUUGCAGcGACG- -5'
19202 3' -53.8 NC_004684.1 + 43643 0.7 0.612725
Target:  5'- -gGcCCGAACUGCGCAccgagcaguGCGcCGCcaGCg -3'
miRNA:   3'- gaCaGGCUUGACGCGU---------UGCaGCGa-CG- -5'
19202 3' -53.8 NC_004684.1 + 59376 0.7 0.623657
Target:  5'- gUGUCCugGAACcGCccgGCGGCacaGUCGCUGCa -3'
miRNA:   3'- gACAGG--CUUGaCG---CGUUG---CAGCGACG- -5'
19202 3' -53.8 NC_004684.1 + 57939 0.7 0.634596
Target:  5'- uUG-CCGAccgcCUGCGguGC-UCGCUGCg -3'
miRNA:   3'- gACaGGCUu---GACGCguUGcAGCGACG- -5'
19202 3' -53.8 NC_004684.1 + 48022 0.69 0.656458
Target:  5'- cCUGcUCCGGgaaccGCUGCGCGaucagGCGgCGCaUGCg -3'
miRNA:   3'- -GAC-AGGCU-----UGACGCGU-----UGCaGCG-ACG- -5'
19202 3' -53.8 NC_004684.1 + 27841 0.69 0.66736
Target:  5'- gCUGggcaCCGAgcgcGCUGUGCAcgcaggaguGCcgGUCGCUGCu -3'
miRNA:   3'- -GACa---GGCU----UGACGCGU---------UG--CAGCGACG- -5'
19202 3' -53.8 NC_004684.1 + 31394 0.69 0.671713
Target:  5'- uCUGUCCGGcgggcaccaccccgACUGUGCGccaggccugcguggaGUCGCUGUc -3'
miRNA:   3'- -GACAGGCU--------------UGACGCGUug-------------CAGCGACG- -5'
19202 3' -53.8 NC_004684.1 + 42348 0.69 0.67823
Target:  5'- --uUCUgGAGCUGCGCcACGUCGaUGCc -3'
miRNA:   3'- gacAGG-CUUGACGCGuUGCAGCgACG- -5'
19202 3' -53.8 NC_004684.1 + 6794 0.69 0.67823
Target:  5'- gUGaCCGGcCUGCGCAcCGUgCGCgGCg -3'
miRNA:   3'- gACaGGCUuGACGCGUuGCA-GCGaCG- -5'
19202 3' -53.8 NC_004684.1 + 31544 0.69 0.67823
Target:  5'- cCUGcCCgcGAACUGgacCGCgAGCGUCGCUGa -3'
miRNA:   3'- -GACaGG--CUUGAC---GCG-UUGCAGCGACg -5'
19202 3' -53.8 NC_004684.1 + 14811 0.69 0.699829
Target:  5'- gCUGUccaCCGGACUGUGgGGCG-CGCcguggUGCg -3'
miRNA:   3'- -GACA---GGCUUGACGCgUUGCaGCG-----ACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.