miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19202 3' -53.8 NC_004684.1 + 37082 0.67 0.811579
Target:  5'- cCUGUUCGcGgUGCGCGAU---GCUGCg -3'
miRNA:   3'- -GACAGGCuUgACGCGUUGcagCGACG- -5'
19202 3' -53.8 NC_004684.1 + 12282 0.68 0.752495
Target:  5'- -gGcCCGuGCUGCGCAGCG-CGCcaacgGUg -3'
miRNA:   3'- gaCaGGCuUGACGCGUUGCaGCGa----CG- -5'
19202 3' -53.8 NC_004684.1 + 25604 0.68 0.752495
Target:  5'- gUGggacgCCGGGCacaUGCGC-GCGaCGCUGCc -3'
miRNA:   3'- gACa----GGCUUG---ACGCGuUGCaGCGACG- -5'
19202 3' -53.8 NC_004684.1 + 8016 0.68 0.76271
Target:  5'- -gGUaggCGAGCUGCGUuauuACGUCgGCUGg -3'
miRNA:   3'- gaCAg--GCUUGACGCGu---UGCAG-CGACg -5'
19202 3' -53.8 NC_004684.1 + 50783 0.67 0.772792
Target:  5'- aUGUCCGcGCggucggUGCGCAACaugaaGUCGUcGCg -3'
miRNA:   3'- gACAGGCuUG------ACGCGUUG-----CAGCGaCG- -5'
19202 3' -53.8 NC_004684.1 + 50006 0.67 0.782731
Target:  5'- uCUGaCCGggUgUGCGCAcCGUCgGCgGCa -3'
miRNA:   3'- -GACaGGCuuG-ACGCGUuGCAG-CGaCG- -5'
19202 3' -53.8 NC_004684.1 + 23763 0.67 0.782731
Target:  5'- -aGUUCGGGCcgugggGCGCGGCGUUGg-GCg -3'
miRNA:   3'- gaCAGGCUUGa-----CGCGUUGCAGCgaCG- -5'
19202 3' -53.8 NC_004684.1 + 51556 0.67 0.792516
Target:  5'- uUGU-CGcuCUGCGCcaguGCG-CGCUGCg -3'
miRNA:   3'- gACAgGCuuGACGCGu---UGCaGCGACG- -5'
19202 3' -53.8 NC_004684.1 + 11831 0.67 0.811579
Target:  5'- gCUGUCCGGcgACUgGCGCGACuUCG--GCa -3'
miRNA:   3'- -GACAGGCU--UGA-CGCGUUGcAGCgaCG- -5'
19202 3' -53.8 NC_004684.1 + 63831 0.68 0.742159
Target:  5'- -gGUgCGGAUgGCGCGGCGcaCGCUGUc -3'
miRNA:   3'- gaCAgGCUUGaCGCGUUGCa-GCGACG- -5'
19202 3' -53.8 NC_004684.1 + 14738 0.68 0.742159
Target:  5'- -gGUCCGAGgaUGCGgGAcCGUCGCgGUu -3'
miRNA:   3'- gaCAGGCUUg-ACGCgUU-GCAGCGaCG- -5'
19202 3' -53.8 NC_004684.1 + 14811 0.69 0.699829
Target:  5'- gCUGUccaCCGGACUGUGgGGCG-CGCcguggUGCg -3'
miRNA:   3'- -GACA---GGCUUGACGCgUUGCaGCG-----ACG- -5'
19202 3' -53.8 NC_004684.1 + 59689 0.74 0.398313
Target:  5'- cCUGcgCCGAGCUGCGCGggguGCGggugCGCauccUGCg -3'
miRNA:   3'- -GACa-GGCUUGACGCGU----UGCa---GCG----ACG- -5'
19202 3' -53.8 NC_004684.1 + 7377 0.74 0.416756
Target:  5'- --aUCCGAGCUGUGCugguggauGCGccCGCUGCu -3'
miRNA:   3'- gacAGGCUUGACGCGu-------UGCa-GCGACG- -5'
19202 3' -53.8 NC_004684.1 + 33086 0.71 0.580066
Target:  5'- uCUGUCCGGcguggcGCUGC-CGACGcaggCGCUcGCg -3'
miRNA:   3'- -GACAGGCU------UGACGcGUUGCa---GCGA-CG- -5'
19202 3' -53.8 NC_004684.1 + 59376 0.7 0.623657
Target:  5'- gUGUCCugGAACcGCccgGCGGCacaGUCGCUGCa -3'
miRNA:   3'- gACAGG--CUUGaCG---CGUUG---CAGCGACG- -5'
19202 3' -53.8 NC_004684.1 + 57939 0.7 0.634596
Target:  5'- uUG-CCGAccgcCUGCGguGC-UCGCUGCg -3'
miRNA:   3'- gACaGGCUu---GACGCguUGcAGCGACG- -5'
19202 3' -53.8 NC_004684.1 + 48022 0.69 0.656458
Target:  5'- cCUGcUCCGGgaaccGCUGCGCGaucagGCGgCGCaUGCg -3'
miRNA:   3'- -GAC-AGGCU-----UGACGCGU-----UGCaGCG-ACG- -5'
19202 3' -53.8 NC_004684.1 + 27841 0.69 0.66736
Target:  5'- gCUGggcaCCGAgcgcGCUGUGCAcgcaggaguGCcgGUCGCUGCu -3'
miRNA:   3'- -GACa---GGCU----UGACGCGU---------UG--CAGCGACG- -5'
19202 3' -53.8 NC_004684.1 + 31544 0.69 0.67823
Target:  5'- cCUGcCCgcGAACUGgacCGCgAGCGUCGCUGa -3'
miRNA:   3'- -GACaGG--CUUGAC---GCG-UUGCAGCGACg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.