Results 21 - 40 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19202 | 3' | -53.8 | NC_004684.1 | + | 31544 | 0.69 | 0.67823 |
Target: 5'- cCUGcCCgcGAACUGgacCGCgAGCGUCGCUGa -3' miRNA: 3'- -GACaGG--CUUGAC---GCG-UUGCAGCGACg -5' |
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19202 | 3' | -53.8 | NC_004684.1 | + | 14811 | 0.69 | 0.699829 |
Target: 5'- gCUGUccaCCGGACUGUGgGGCG-CGCcguggUGCg -3' miRNA: 3'- -GACA---GGCUUGACGCgUUGCaGCG-----ACG- -5' |
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19202 | 3' | -53.8 | NC_004684.1 | + | 1762 | 0.69 | 0.699829 |
Target: 5'- ---aCCgGAGCUGCGCG-CGUgGCUGg -3' miRNA: 3'- gacaGG-CUUGACGCGUuGCAgCGACg -5' |
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19202 | 3' | -53.8 | NC_004684.1 | + | 63789 | 0.68 | 0.721169 |
Target: 5'- gUGUUCGGcgGCccagUGCGCGACGUacuccacgucccCGCUGUg -3' miRNA: 3'- gACAGGCU--UG----ACGCGUUGCA------------GCGACG- -5' |
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19202 | 3' | -53.8 | NC_004684.1 | + | 34472 | 0.68 | 0.731713 |
Target: 5'- -gGUCaUGGuCUGUGCAGCGUCGCcgagGUc -3' miRNA: 3'- gaCAG-GCUuGACGCGUUGCAGCGa---CG- -5' |
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19202 | 3' | -53.8 | NC_004684.1 | + | 57097 | 0.68 | 0.752495 |
Target: 5'- -gGUgCGGGCgaccucugGCGCGacaccgGCGUCGCUGg -3' miRNA: 3'- gaCAgGCUUGa-------CGCGU------UGCAGCGACg -5' |
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19202 | 3' | -53.8 | NC_004684.1 | + | 56454 | 0.68 | 0.76271 |
Target: 5'- aUGUCgcggcUGAGCaUGCGCc-CGUCGCUGg -3' miRNA: 3'- gACAG-----GCUUG-ACGCGuuGCAGCGACg -5' |
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19202 | 3' | -53.8 | NC_004684.1 | + | 38230 | 0.67 | 0.772792 |
Target: 5'- -gGUUCGGgaacuGCUGCGCGGCGaa-CUGCg -3' miRNA: 3'- gaCAGGCU-----UGACGCGUUGCagcGACG- -5' |
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19202 | 3' | -53.8 | NC_004684.1 | + | 5604 | 0.67 | 0.782731 |
Target: 5'- -cGgggCCGAGCUggcGCGCAugGU-GCUGg -3' miRNA: 3'- gaCa--GGCUUGA---CGCGUugCAgCGACg -5' |
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19202 | 3' | -53.8 | NC_004684.1 | + | 7052 | 0.67 | 0.802135 |
Target: 5'- gCUGgCCGAAC-GCGCggUGaUCGC-GCu -3' miRNA: 3'- -GACaGGCUUGaCGCGuuGC-AGCGaCG- -5' |
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19202 | 3' | -53.8 | NC_004684.1 | + | 6794 | 0.69 | 0.67823 |
Target: 5'- gUGaCCGGcCUGCGCAcCGUgCGCgGCg -3' miRNA: 3'- gACaGGCUuGACGCGUuGCA-GCGaCG- -5' |
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19202 | 3' | -53.8 | NC_004684.1 | + | 42348 | 0.69 | 0.67823 |
Target: 5'- --uUCUgGAGCUGCGCcACGUCGaUGCc -3' miRNA: 3'- gacAGG-CUUGACGCGuUGCAGCgACG- -5' |
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19202 | 3' | -53.8 | NC_004684.1 | + | 42781 | 0.66 | 0.855813 |
Target: 5'- cCUGgCCGcccaUGCGCGccACGUcCGCUGUc -3' miRNA: 3'- -GACaGGCuug-ACGCGU--UGCA-GCGACG- -5' |
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19202 | 3' | -53.8 | NC_004684.1 | + | 5822 | 0.71 | 0.547787 |
Target: 5'- -cGUCCcAGCUGCGCGAg--UGCUGCc -3' miRNA: 3'- gaCAGGcUUGACGCGUUgcaGCGACG- -5' |
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19202 | 3' | -53.8 | NC_004684.1 | + | 62585 | 0.71 | 0.558491 |
Target: 5'- uUGUCCucGAuCUGCGCGccggucaugGCGUCGC-GCa -3' miRNA: 3'- gACAGG--CUuGACGCGU---------UGCAGCGaCG- -5' |
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19202 | 3' | -53.8 | NC_004684.1 | + | 63512 | 0.71 | 0.558491 |
Target: 5'- aUGUCUGAccaggccuuggcACUGCGCAGCGgCG-UGCc -3' miRNA: 3'- gACAGGCU------------UGACGCGUUGCaGCgACG- -5' |
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19202 | 3' | -53.8 | NC_004684.1 | + | 54222 | 0.71 | 0.562789 |
Target: 5'- gCUGUCCuGGACcaggUGCGCGucacgcgucagcgacGCGaggCGCUGCg -3' miRNA: 3'- -GACAGG-CUUG----ACGCGU---------------UGCa--GCGACG- -5' |
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19202 | 3' | -53.8 | NC_004684.1 | + | 36283 | 0.71 | 0.590921 |
Target: 5'- -gGUCCuccagcgcCUGCGCGGCGUC-CUGCc -3' miRNA: 3'- gaCAGGcuu-----GACGCGUUGCAGcGACG- -5' |
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19202 | 3' | -53.8 | NC_004684.1 | + | 43643 | 0.7 | 0.612725 |
Target: 5'- -gGcCCGAACUGCGCAccgagcaguGCGcCGCcaGCg -3' miRNA: 3'- gaCaGGCUUGACGCGU---------UGCaGCGa-CG- -5' |
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19202 | 3' | -53.8 | NC_004684.1 | + | 31394 | 0.69 | 0.671713 |
Target: 5'- uCUGUCCGGcgggcaccaccccgACUGUGCGccaggccugcguggaGUCGCUGUc -3' miRNA: 3'- -GACAGGCU--------------UGACGCGUug-------------CAGCGACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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